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Identification of the 216kbp gene cluster and structure elucidation of gargantulides B and C, new complex 52-membered macrolides from Amycolatopsis sp

View ORCID ProfileDaniel Carretero-Molina, Francisco Javier Ortiz-López, View ORCID ProfileTetiana Gren, View ORCID ProfileDaniel Oves-Costales, Jesús Martín, View ORCID ProfileFernando Román-Hurtado, View ORCID ProfileTue Sparholt Jørgensen, View ORCID ProfileMercedes de la Cruz, Caridad Díaz, View ORCID ProfileFrancisca Vicente, View ORCID ProfileKai Blin, View ORCID ProfileFernando Reyes, View ORCID ProfileTilmann Weber, View ORCID ProfileOlga Genilloud
doi: https://doi.org/10.1101/2021.08.11.455926
Daniel Carretero-Molina
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Francisco Javier Ortiz-López
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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  • For correspondence: tiwe@biosustain.dtu.dk olga.genilloud@medinaandalucia.es javier.ortiz@medinaandalucia.es
Tetiana Gren
bThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, building 220, 2800 Kgs. Lyngby, Denmark
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Daniel Oves-Costales
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Jesús Martín
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Fernando Román-Hurtado
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Tue Sparholt Jørgensen
bThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, building 220, 2800 Kgs. Lyngby, Denmark
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Mercedes de la Cruz
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Caridad Díaz
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Francisca Vicente
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Kai Blin
bThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, building 220, 2800 Kgs. Lyngby, Denmark
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Fernando Reyes
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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Tilmann Weber
bThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, building 220, 2800 Kgs. Lyngby, Denmark
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  • For correspondence: tiwe@biosustain.dtu.dk olga.genilloud@medinaandalucia.es javier.ortiz@medinaandalucia.es
Olga Genilloud
aFundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Avda. del Conocimiento 34, 18016 Armilla (Granada), Spain
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  • For correspondence: tiwe@biosustain.dtu.dk olga.genilloud@medinaandalucia.es javier.ortiz@medinaandalucia.es
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Abstract

Gargantulides B and C, two new and highly complex 52-membered glycosylated macrolactones, were isolated from Amycolatopsis sp. strain CA-230715 during an antibacterial screening campaign. The structures of these giant macrolides were elucidated by 2D NMR spectroscopy and shown to be related to gargantulide A, although containing additional β-glucopyranose and/or α-arabinofuranose monosaccharides separately attached to their backbones. Genome sequencing allowed the identification of a strikingly large 216 kbp biosynthetic gene cluster, among the largest type I PKS clusters described so far, and the proposal of a biosynthetic pathway for gargantulides A-C. Additionally, genes putatively responsible for the biosynthesis of the amino sugar β-3,6-deoxy-3-methylamino glucose, reported exclusively in gargantulide macrolides, were also found in the cluster and described in this work. The absolute configurations of gargantulides B and C were assigned based on a combination of NMR and bioinformatics analysis of ketoreductase and enoylreductase domains within the multimodular type I PKS. Furthermore, the absolute stereochemistry of the related macrolide gargantulide A has now been revised and completed. Gargantulides B and C display potent antibacterial activity against a set of drug-resistant Gram-positive bacteria and moderate activity against the clinically relevant Gram-negative pathogen Acinetobacter baumannii.

Competing Interest Statement

The authors have declared no competing interest.

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Identification of the 216kbp gene cluster and structure elucidation of gargantulides B and C, new complex 52-membered macrolides from Amycolatopsis sp
Daniel Carretero-Molina, Francisco Javier Ortiz-López, Tetiana Gren, Daniel Oves-Costales, Jesús Martín, Fernando Román-Hurtado, Tue Sparholt Jørgensen, Mercedes de la Cruz, Caridad Díaz, Francisca Vicente, Kai Blin, Fernando Reyes, Tilmann Weber, Olga Genilloud
bioRxiv 2021.08.11.455926; doi: https://doi.org/10.1101/2021.08.11.455926
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Identification of the 216kbp gene cluster and structure elucidation of gargantulides B and C, new complex 52-membered macrolides from Amycolatopsis sp
Daniel Carretero-Molina, Francisco Javier Ortiz-López, Tetiana Gren, Daniel Oves-Costales, Jesús Martín, Fernando Román-Hurtado, Tue Sparholt Jørgensen, Mercedes de la Cruz, Caridad Díaz, Francisca Vicente, Kai Blin, Fernando Reyes, Tilmann Weber, Olga Genilloud
bioRxiv 2021.08.11.455926; doi: https://doi.org/10.1101/2021.08.11.455926

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