Enabling metagenomic surveillance for bacterial tick-borne pathogens using nanopore sequencing with adaptive sampling

Evan J. Kipp; Laramie L. Lindsey; Benedict S. Khoo; Christopher Faulk; Jonathan D. Oliver; Peter A. Larsen

doi:10.1101/2021.08.17.456696

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Enabling metagenomic surveillance for bacterial tick-borne pathogens using nanopore sequencing with adaptive sampling

Evan J. Kipp, Laramie L. Lindsey, Benedict S. Khoo, View ORCID ProfileChristopher Faulk, Jonathan D. Oliver, Peter A. Larsen

doi: https://doi.org/10.1101/2021.08.17.456696

Evan J. Kipp

1Department of Veterinary and Biomedical Sciences - College of Veterinary Medicine, University of Minnesota—Twin Cities, St. Paul, Minnesota, United States; (E.J.K.); (L.L.L.); (P.A.L.)

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For correspondence: kipp0046@umn.edu linds758@umn.edu plarsen@umn.edu

Laramie L. Lindsey

1Department of Veterinary and Biomedical Sciences - College of Veterinary Medicine, University of Minnesota—Twin Cities, St. Paul, Minnesota, United States; (E.J.K.); (L.L.L.); (P.A.L.)

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For correspondence: kipp0046@umn.edu linds758@umn.edu plarsen@umn.edu

Benedict S. Khoo

2Division of Environmental Health Sciences - School of Public Health, University of Minnesota—Twin Cities, Minneapolis, Minnesota, United States; (B.K.); (J.D.O.)

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For correspondence: khoo0011@umn.edu joliver@umn.edu

Christopher Faulk

3Department of Animal Science - College of Food, Agricultural and Natural Resource Sciences, University of Minnesota—Twin Cities, St. Paul, Minnesota, United States; (C.F.)

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ORCID record for Christopher Faulk
For correspondence: cfaulk@umn.edu

Jonathan D. Oliver

2Division of Environmental Health Sciences - School of Public Health, University of Minnesota—Twin Cities, Minneapolis, Minnesota, United States; (B.K.); (J.D.O.)

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For correspondence: khoo0011@umn.edu joliver@umn.edu

Peter A. Larsen

1Department of Veterinary and Biomedical Sciences - College of Veterinary Medicine, University of Minnesota—Twin Cities, St. Paul, Minnesota, United States; (E.J.K.); (L.L.L.); (P.A.L.)

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For correspondence: plarsen@umn.edu kipp0046@umn.edu linds758@umn.edu plarsen@umn.edu