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HIV-1 Mutants that Escape the Cytotoxic T-Lymphocytes are Defective in Viral DNA Integration

Muthukumar Balasubramaniam, Santosh Thapa, Benem-Orom Davids, Alex Bryer, Chaoyi Xu, Jiong Shi, Christopher Aiken, Jui Pandhare, Juan R. Perilla, Chandravanu Dash
doi: https://doi.org/10.1101/2021.08.29.458043
Muthukumar Balasubramaniam
1The Center for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee
2Department of Biochemistry and Cancer Biology, Meharry Medical College, Nashville, Tennessee
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  • For correspondence: cdash@mmc.edu muthukumarb@mmc.edu
Santosh Thapa
1The Center for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee
2Department of Biochemistry and Cancer Biology, Meharry Medical College, Nashville, Tennessee
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Benem-Orom Davids
1The Center for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee
2Department of Biochemistry and Cancer Biology, Meharry Medical College, Nashville, Tennessee
3School of Graduate Studies and Research, Meharry Medical College, Nashville, Tennessee
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Alex Bryer
5Department of Chemistry University of Delaware, Newark, Delaware
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Chaoyi Xu
5Department of Chemistry University of Delaware, Newark, Delaware
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Jiong Shi
6Department of Microbiology, Pathology, and Immunology Vanderbilt University Medical Center, Nashville, Tennessee
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Christopher Aiken
6Department of Microbiology, Pathology, and Immunology Vanderbilt University Medical Center, Nashville, Tennessee
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Jui Pandhare
1The Center for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee
3School of Graduate Studies and Research, Meharry Medical College, Nashville, Tennessee
4Department of Microbiology and Immunology Meharry Medical College, Nashville, Tennessee
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Juan R. Perilla
5Department of Chemistry University of Delaware, Newark, Delaware
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Chandravanu Dash
1The Center for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee
2Department of Biochemistry and Cancer Biology, Meharry Medical College, Nashville, Tennessee
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  • For correspondence: cdash@mmc.edu muthukumarb@mmc.edu
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Abstract

ABSTRACT

HIV-1 replication is durably controlled in certain untreated HIV-1-infected individuals expressing particular human leukocyte antigens (HLA). These HLAs tag infected cells for elimination by presenting specific viral epitopes to CD8+ cytotoxic T-lymphocytes (CTL). In individuals expressing HLA-B27, CTLs primarily target the capsid protein (CA)-derived KK10 epitope. Selection of CA mutation R264K helps HIV-1 escape the CTL response but severely diminishes virus infectivity. Here we report that the R264K mutation-associated infectivity defect arises primarily from impaired viral DNA integration. Strikingly, selection of the compensatory CA mutation S173A or depletion of host cyclophilin A largely rescues the R264K-associated integration and infectivity defects. Collectively, our study reveals novel mechanistic insights into the fitness defect incurred by an HIV-1 variant escaping a CA-directed CTL response.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 29, 2021.
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HIV-1 Mutants that Escape the Cytotoxic T-Lymphocytes are Defective in Viral DNA Integration
Muthukumar Balasubramaniam, Santosh Thapa, Benem-Orom Davids, Alex Bryer, Chaoyi Xu, Jiong Shi, Christopher Aiken, Jui Pandhare, Juan R. Perilla, Chandravanu Dash
bioRxiv 2021.08.29.458043; doi: https://doi.org/10.1101/2021.08.29.458043
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HIV-1 Mutants that Escape the Cytotoxic T-Lymphocytes are Defective in Viral DNA Integration
Muthukumar Balasubramaniam, Santosh Thapa, Benem-Orom Davids, Alex Bryer, Chaoyi Xu, Jiong Shi, Christopher Aiken, Jui Pandhare, Juan R. Perilla, Chandravanu Dash
bioRxiv 2021.08.29.458043; doi: https://doi.org/10.1101/2021.08.29.458043

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