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Patient derived organoids reveal that PI3K/AKT signalling is an escape pathway for radioresistance and a target for therapy in rectal cancer

Kasun Wanigasooriya, Joao D. Barros-Silva, Louise Tee, Mohammed E. El-Asrag, Agata Stodolna, Oliver J. Pickles, Joanne Stockton, Claire Bryer, Rachel Hoare, Celina Whalley, Robert Tyler, Tortieju Sillo, View ORCID ProfileChristopher Yau, Tariq Ismail, View ORCID ProfileAndrew D. Beggs
doi: https://doi.org/10.1101/2021.08.31.458326
Kasun Wanigasooriya
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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  • For correspondence: kasun.wanigasooriya@nhs.net
Joao D. Barros-Silva
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Louise Tee
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Mohammed E. El-Asrag
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Agata Stodolna
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Oliver J. Pickles
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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Joanne Stockton
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Claire Bryer
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Rachel Hoare
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Celina Whalley
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Robert Tyler
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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Tortieju Sillo
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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Christopher Yau
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
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Tariq Ismail
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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Andrew D. Beggs
1Institute of Cancer and Genomic Science, College of Medical and Dental Science, University of Birmingham, Vincent Drive, Edgbaston, Birmingham, B15 2TT
2University Hospitals Birmingham NHS Foundation Trust, Mindelsohn Way, Edgbaston, Birmingham, B15 2WB
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Abstract

Partial or total resistance to preoperative chemoradiotherapy occurs in more than half of locally advanced rectal cancer patients. Several novel or repurposed drugs have been trialled to improve cancer cell sensitivity to radiotherapy, with limited success. To understand the mechanisms underlying this resistance and target them effectively, we initially compared treatment-naive transcriptomes of radiation-resistant and radiation-sensitive patient-derived organoids (PDO) to identify biological pathways involved in radiation resistance. Pathway analysis revealed that PI3K/AKT/mTOR and epithelial mesenchymal transition pathway genes were upregulated in radioresistant PDOs. Moreover, single-cell sequencing of pre & post-irradiation PDOs showed mTORC1 upregulation, which was confirmed by a genome-wide CRSIPR-Cas9 knockout screen using irradiated colorectal cancer (CRC) cell lines. Based on these findings, we evaluated cancer cell viability in vitro when treated with radiation in combination with dual PI3K/mTOR inhibitors apitolisib or dactolisib. Significant AKT phosphorylation was detected in HCT116 cells two hours post-irradiation (p=0.027). Dual PI3K/mTOR inhibitors radiosensitised HCT116 and radiation-resistant PDO lines. The PI3K/AKT/mTOR pathway upregulation contributes to radioresistance and its pharmacological inhibition leads to significant radiosensitisation in an organoid model of CRC and is a target for clinical trials.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted September 01, 2021.
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Patient derived organoids reveal that PI3K/AKT signalling is an escape pathway for radioresistance and a target for therapy in rectal cancer
Kasun Wanigasooriya, Joao D. Barros-Silva, Louise Tee, Mohammed E. El-Asrag, Agata Stodolna, Oliver J. Pickles, Joanne Stockton, Claire Bryer, Rachel Hoare, Celina Whalley, Robert Tyler, Tortieju Sillo, Christopher Yau, Tariq Ismail, Andrew D. Beggs
bioRxiv 2021.08.31.458326; doi: https://doi.org/10.1101/2021.08.31.458326
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Patient derived organoids reveal that PI3K/AKT signalling is an escape pathway for radioresistance and a target for therapy in rectal cancer
Kasun Wanigasooriya, Joao D. Barros-Silva, Louise Tee, Mohammed E. El-Asrag, Agata Stodolna, Oliver J. Pickles, Joanne Stockton, Claire Bryer, Rachel Hoare, Celina Whalley, Robert Tyler, Tortieju Sillo, Christopher Yau, Tariq Ismail, Andrew D. Beggs
bioRxiv 2021.08.31.458326; doi: https://doi.org/10.1101/2021.08.31.458326

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