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Beyond traditional visual sleep scoring: massive feature extraction and unsupervised clustering of sleep time series

View ORCID ProfileNicolas Decat, Jasmine Walter, Zhao H. Koh, Piengkwan Sribanditmongkol, View ORCID ProfileBen D. Fulcher, Jennifer M. Windt, View ORCID ProfileThomas Andrillon, Naotsugu Tsuchiya
doi: https://doi.org/10.1101/2021.09.08.458981
Nicolas Decat
1School of Psychological Sciences, Turner Institute for Brain and Mental Health, Monash University, Melbourne, Victoria, Australia
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Jasmine Walter
1School of Psychological Sciences, Turner Institute for Brain and Mental Health, Monash University, Melbourne, Victoria, Australia
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Zhao H. Koh
1School of Psychological Sciences, Turner Institute for Brain and Mental Health, Monash University, Melbourne, Victoria, Australia
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Piengkwan Sribanditmongkol
1School of Psychological Sciences, Turner Institute for Brain and Mental Health, Monash University, Melbourne, Victoria, Australia
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Ben D. Fulcher
2School of Physics, University of Sydney, Sydney, NSW, Australia
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Jennifer M. Windt
3Philosophy Department, Monash University, Melbourne, Victoria, Australia
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Thomas Andrillon
4Paris Brain Institute, Sorbonne Université, Inserm-CNRS, Paris, 75013, France
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Naotsugu Tsuchiya
2School of Physics, University of Sydney, Sydney, NSW, Australia
5Center for Information and Neural Networks (CiNet), National Institute of Information and Communications Technology (NICT), Suita, Osaka 565-0871, Japan
6Advanced Telecommunications Research Computational Neuroscience Laboratories, 2-2-2 Hikaridai, Seika-cho, Soraku-gun, Kyoto 619-0288, Japan
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  • For correspondence: naotsugu.tsuchiya@monash.edu
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Abstract

Sleep is classically measured with electrophysiological recordings, which are then scored based on guidelines tailored for the visual inspection of these recordings. As such, these rules reflect a limited range of features easily captured by the human eye and do not always reflect the physiological changes associated with sleep. Here we present a novel analysis framework that characterizes sleep using over 7700 time-series features from the hctsa software. We used clustering to categorize sleep epochs based on the similarity of their features, without relying on established scoring conventions. The resulting structure overlapped substantially with that defined by visual scoring and we report novel features that are highly discriminative of sleep stages. However, we also observed discrepancies as hctsa features unraveled distinctive properties within traditional sleep stages. Our framework lays the groundwork for a data-driven exploration of sleep and the identification of new signatures of sleep disorders and conscious sleep states.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 09, 2021.
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Beyond traditional visual sleep scoring: massive feature extraction and unsupervised clustering of sleep time series
Nicolas Decat, Jasmine Walter, Zhao H. Koh, Piengkwan Sribanditmongkol, Ben D. Fulcher, Jennifer M. Windt, Thomas Andrillon, Naotsugu Tsuchiya
bioRxiv 2021.09.08.458981; doi: https://doi.org/10.1101/2021.09.08.458981
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Beyond traditional visual sleep scoring: massive feature extraction and unsupervised clustering of sleep time series
Nicolas Decat, Jasmine Walter, Zhao H. Koh, Piengkwan Sribanditmongkol, Ben D. Fulcher, Jennifer M. Windt, Thomas Andrillon, Naotsugu Tsuchiya
bioRxiv 2021.09.08.458981; doi: https://doi.org/10.1101/2021.09.08.458981

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