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Pharmacological perturbation of intracellular dynamics as a SARS-CoV-2 antiviral strategy

View ORCID ProfileWilliam Bakhache, View ORCID ProfileEmma Partiot, View ORCID ProfileVincent Lucansky, View ORCID ProfileYonis Bare, View ORCID ProfileBoris Bonaventure, View ORCID ProfileCaroline Goujon, Cédric Bories, View ORCID ProfileMaika S. Deffieu, View ORCID ProfileRaphael Gaudin
doi: https://doi.org/10.1101/2021.09.10.459410
William Bakhache
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
3SATT AxLR, Montpellier, France
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Emma Partiot
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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Vincent Lucansky
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
4Comenius University in Bratislava, the Jessenius Faculty of Medicine in Martin (JFMED CU), Biomedical Center Martin, Mala Hora 4C, 036 01 Martin, Slovakia
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Yonis Bare
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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Boris Bonaventure
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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Caroline Goujon
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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Cédric Bories
5AGV Discovery, 34090 Montpellier, France
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Maika S. Deffieu
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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Raphael Gaudin
1Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, 34293 Montpellier, France
2Université de Montpellier, 34090 Montpellier, France
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  • For correspondence: raphael.gaudin@irim.cnrs.fr
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Abstract

SARS-CoV-2 (CoV2) is the viral agent responsible for the pandemic of the coronavirus disease 2019 (COVID-19). Vaccines are being deployed all over the world with good efficacy, but there is no approved antiviral treatment to date. This is particularly needed since the emergence of variants and the potential immune escape may prolong pandemic spreading of the infection for much longer than anticipated. Here, we developed a series of small molecules and identified RG10 as a potent antiviral compound against SARS-CoV-2 in cell lines and human airway epithelia (HAE). RG10 localizes to endoplasmic reticulum (ER) membranes, perturbing ER morphology and inducing ER stress. Yet, RG10 does not associate with SARS-CoV-2 replication sites although preventing virus replication. To further investigate the antiviral properties of our compound, we developed fluorescent SARS-CoV-2 viral particles allowing us to track virus arrival to ER membranes. Live cell imaging of replication-competent virus infection revealed that RG10 stalls the intracellular virus-ER dynamics. Finally, we synthesized RG10b, a stable version of RG10, that showed increased potency in vitro and in HAE with a pharmacokinetic half-life greater than 2 h. Together, our work reports on a novel fluorescent virus model and innovative antiviral strategy consisting of the perturbation of ER/virus dynamics, highlighting the promising antiviral properties of RG10 and RG10b.

Competing Interest Statement

The antiviral molecules RG10 and RG10b described in this manuscript have been patented.

Footnotes

  • Figures were updated

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted September 13, 2021.
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Pharmacological perturbation of intracellular dynamics as a SARS-CoV-2 antiviral strategy
William Bakhache, Emma Partiot, Vincent Lucansky, Yonis Bare, Boris Bonaventure, Caroline Goujon, Cédric Bories, Maika S. Deffieu, Raphael Gaudin
bioRxiv 2021.09.10.459410; doi: https://doi.org/10.1101/2021.09.10.459410
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Pharmacological perturbation of intracellular dynamics as a SARS-CoV-2 antiviral strategy
William Bakhache, Emma Partiot, Vincent Lucansky, Yonis Bare, Boris Bonaventure, Caroline Goujon, Cédric Bories, Maika S. Deffieu, Raphael Gaudin
bioRxiv 2021.09.10.459410; doi: https://doi.org/10.1101/2021.09.10.459410

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