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Cell-based and cell-free firefly luciferase complementation assay to quantify Human Immunodeficiency Virus type 1 Rev-Rev interaction

View ORCID ProfileTucker Hansen, Jodie Baris, Min Zhao, Richard Sutton
doi: https://doi.org/10.1101/2021.09.13.460071
Tucker Hansen
Department of Internal Medicine Section of Infectious Diseases Yale School of Medicine, New Haven, CT 06520 United States of America
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Jodie Baris
Department of Internal Medicine Section of Infectious Diseases Yale School of Medicine, New Haven, CT 06520 United States of America
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Min Zhao
Department of Internal Medicine Section of Infectious Diseases Yale School of Medicine, New Haven, CT 06520 United States of America
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Richard Sutton
Department of Internal Medicine Section of Infectious Diseases Yale School of Medicine, New Haven, CT 06520 United States of America
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  • For correspondence: richard.sutton@yale.edu
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Abstract

Rev is an essential regulatory protein of Human Immunodeficiency Virus type 1 (HIV) that is found in the nucleus of infected cells. Rev multimerizes on the Rev-response element (RRE) of HIV RNA to facilitate the export of intron-containing HIV mRNAs from the nucleus to the cytoplasm, and, as such, HIV cannot replicate in the absence of Rev. We have developed cell-intact and cell-free assays based upon a robust firefly split-luciferase complementation system, both of which quantify Rev-Rev interaction. Using the cell-based system we show that additional Crm1 did not impact the interaction whereas excess Rev reduced it. Furthermore, when a series of mutant Revs were tested, there was a strong correlation between the results of the cell-based assay and the results of a functional Rev trans-complementation infectivity assay. Of interest, a camelid nanobody (NB) that was known to inhibit Rev function enhanced Rev-Rev interaction in the cell-based system. We observed a similar increase in Rev-Rev interaction in a cell-free system, when cell lysates expressing NLUC-Rev or CLUC-Rev were simply mixed. In the cell-free system Rev-Rev interaction occurred within minutes and was inhibited by excess Rev. The levels of interaction between the mutant Revs tested varied by mutant type. Treatment of Rev lysates with RNAse minimally reduced the degree of interaction whereas addition of HIV RRE RNA enhanced the interaction. Purified GST-Rev protein inhibited the interaction. The Z-factor (Z’) for the cell-free system was ~0.85 when tested in 96-well format, and anti-Rev NB enhanced the interaction in the cell-free system. Thus, we have developed both cell-intact and cell-free systems that can reliably, rapidly, and reproducibly quantify Rev-Rev interaction. These assays, particularly the cell-free one, may be useful in screening and identifying compounds that inhibit Rev function on a high throughput basis.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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Posted September 13, 2021.
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Cell-based and cell-free firefly luciferase complementation assay to quantify Human Immunodeficiency Virus type 1 Rev-Rev interaction
Tucker Hansen, Jodie Baris, Min Zhao, Richard Sutton
bioRxiv 2021.09.13.460071; doi: https://doi.org/10.1101/2021.09.13.460071
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Cell-based and cell-free firefly luciferase complementation assay to quantify Human Immunodeficiency Virus type 1 Rev-Rev interaction
Tucker Hansen, Jodie Baris, Min Zhao, Richard Sutton
bioRxiv 2021.09.13.460071; doi: https://doi.org/10.1101/2021.09.13.460071

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