Abstract
Stellate ganglia within the intrathoracic cardiac control system receive and integrate central, peripheral, and cardiopulmonary information to produce postganglionic cardiac sympathetic inputs. Pathological anatomical and structural remodeling occurs within the neurons of the stellate ganglion (SG) in the setting of heart failure. A large proportion of SG neurons function as interneurons whose networking capabilities are largely unknown. Current therapies are limited to targeting sympathetic activity at the cardiac level or surgical interventions such as stellectomy, to treat heart failure. Future therapies that target the stellate ganglion will require understanding of their networking capabilities to modify any pathological remodeling. We observe SG networking by examining cofluctuation and specificity of SG networked activity to cardiac cycle phases. We investigate network processing of cardiopulmonary transduction by SG neuronal populations in porcine with chronic pacing-induced heart failure and control subjects during extended in-vivo extracellular microelectrode recordings. We find that information processing and cardiac control in chronic heart failure by the SG, relative to controls, exhibits: i) more frequent, short-lived, high magnitude cofluctuations, ii) greater variation in neural specificity to cardiac cycles, and iii) neural network activity and cardiac control linkage that depends on disease state and cofluctuation magnitude.
Introduction
Neural control of cardiac function involves adaptive adjustment of mechanical and electrical activity to meet the organism’s demand for blood flow. This cardioneural control scheme consists of neural populations in the central, peripheral, and intrinsic cardiac nervous systems. Interactions among components of the cardiac nervous system highlight that these neural populations work in concert, rather than as independent, singular processing units (Ardell et al., 2016). From an information processing standpoint, the operation of these interconnected neural networks has evolved to coordinate cardiac function on a beat-by-beat basis, producing the “functional” outputs of this control scheme such as blood pressure, heart rate, or respiratory pressure and rate. Localized adaptations in the cardioneural network in response to pathology can cause an evolution of global network properties with heightened risk of poor outcomes without measurable evidence from these functional outputs (Deyell et al., 2015; Kember et al., 2013).
There is a current focus on understanding cardioneural network processing within the stellate ganglion (SG), a collection of nerves serving as the major source of sympathetic input to the heart(Mehra et al., 2022). The SG (located in either side of the neck) operates as an integrative layer within the control hierarchy where it processes central cardiac inputs to the heart, receives cardiac feedback, and projects efferent control outputs to the heart. In pathological states such as heart failure (HF), morphological and neurochemical remodeling of SG neurons has been reported in both animal models (Ajijola et al., 2013; Han et al., 2012; Ajijola et al., 2015; Nakamura et al., 2016) and in humans (Ajijola et al., 2020, 2012b). Due to its key role in proarrhythmic neural signaling and convenience in surgical accessibility, clinical interventions targeting SG are used to treat various cardiovascular conditions (Vaseghi et al., 2012, 2017; Ajijola et al., 2012a). It has also been established that an enhanced cardiac sympathetic afferent reflex contributes to sympathoexcitation and pathogenesis of heart failure (Wang and Zucker, 1996; Ma et al., 1997; Chen et al., 2015; Wang et al., 2017, 2008, 2014; Gao et al., 2005, 2007). Despite these novel interventions and general understanding, SG clinical therapy will remain largely unexplored without greatly improved understanding of SG neuronal information processing in healthy versus pathological states. Prior studies examining the SG neural activity have been limited to in vivo extracellular recordings (Armour, 1983, 1986; Armour et al., 1998; Yoshie et al., 2020, 2018).
Recently, we explored network processing of cardiopulmonary transduction by SG neuronal populations in healthy porcine, defining a novel metric ‘neural specificity’ that measures specificity of neural firing patterns to cardiopulmonary signals (Sudarshan et al., 2021). This metric is contrastive and a measure of the difference between the probability density function (PDF) of neural ‘sampling’ of a control target relative to the same in the random sampling limit. While the target, left ventricular pressure (LVP) considered here is periodic this is not a necessary condition for use of the specificity metric; it is also applicable to aperiodic signals in an event-based fashion.
In the current work, we investigate differences in information transfer between control and heart failure porcine models with multi-channel electrode arrays. We first uncover network-level spatiotemporal dynamic signatures by quantifying short-lived high cofluctuation events in neural activity. Second, we study coherence and consistency in the evolution of neural specificity with respect to the control target. Third, we expose differences in neural specificity and its coherence and consistency, via entropy, inside and outside cofluctuation events. These differences are considered for control and heart failure models and quantify differences in the maintenance of function between these groups.
Methods
Animal Experiments
Fig. 1 presents the conceptual overview and study design. The study was performed under a protocol approved by the University of California Los Angeles (UCLA) Animal Research Committee (ARC), in compliance with the UCLA Institutional Animal Care and Use Committee (IACUC) guidelines and the National Institutes of Health (NIH) Guide for the Care and Use of Laboratory Animals. Fig. 1D-E summarizes the studied animal groups and experimental pipeline. Male Yorkshire pigs (n = 17) weighing 57.5 ± 12kg (mean ± SD) were studied as control (n = 6) and HF model (n = 11) groups. For SG neural data collection, the animals were sedated with tiletamine and zolazepam (Telazol, 4-8mg/kg) intramuscularly, intubated, and maintained under general anesthesia with inhaled isoflurane (2%). Continuous intravenous saline (8 − 10ml/kg/h) was infused throughout the protocol and animals were temperature maintained using heated water blankets (37°C − 38°C).
Median sternotomy by an incision down the midline of the entire sternum was performed to have a wide view of the thoracic region (Fig. 1A). The pericardium was opened to expose the heart and both stellate ganglia. After surgical procedures, animals were transitioned to alpha-chloralose anesthesia (6.25mg/125mL; 1mL/kg for bolus, 20 − 35mL/kg or titrated to effect for maintenance) with supplemental oxygen (2L/minute) for in vivo neural recordings from the left stellate ganglion. The left carotid artery was exposed, and a pressure catheter (SPR350, Millar Inc., Houston, TX) was inserted to continuously monitor left ventricular pressure (LVP). Additionally, three-lead surface electrocardiogram (ECG) and respiratory pressure (RP) were monitored continuously, and sampled at 1kHz. Arterial blood gas contents were monitored at least hourly to ensure appropriate experimental conditions. At the end of the protocol, animals were euthanized under deep sedation of isoflurane and cardiac fibrillation was induced.
The heart failure model was created with implanted pacemakers (Viva Cardiac Resynchronization Therapy–Pacemaker, Biotronik, Lake Oswego, OR), as previously described (Hori et al., 2021), and summarized in Fig. 1D. After implantation, animals had a recovery period of 48 hours and chronic bigeminy pacing was initiated from the right ventricle. This process produces premature ventricular contractions (PVCs) which lead to cardiomyopathy, also known as PVC-induced cardiomyopathy (Blaye-Felice et al., 2016). To confirm the progression of cardiomyopathy, echocardiography was performed, before and after implantation. After the animals have been confirmed to have cardiomyopathy (referred as HF animals) at eight weeks after implantation, surgical procedures described in Fig. 1E were performed, and extracellular recordings were obtained from the left stellate ganglion, shown in Fig. 1A. It should be noted that a subset of HF animals (n = 6) underwent an intervention, epicardial application of resiniferatoxin (RTX) to study its effects on the progression of cardiomyopathy as a separate study. However no significant effect of RTX was noted in any of the echocardiographic, serum, physiological, and autonomic tests (Hori et al., 2021). Hence, in this work, we combined RTX-treated HF animals with untreated HF animals.
We confirmed the RTX depleted the afferents by analyzing both structural and functional data (Hori et al., 2021). Structural depletion was proven with immunohistochemistry studies of the left ventricle (LV) and T1 dorsal root ganglion (DRG). Calcitonin gene-related peptide (CGRP)-immunoreactive fibers, a marker of sensory afferent nerves, was significantly reduced within the nerve bundles located in the LV for the RTX-treated group. Furthermore, the depletion of cardiac transient receptor potential vanilloid-1(TRPV1) afferents was confirmed by the significant reduction of CGRPexpressing neurons in DRG. Functional depletion was proven by the response to the agonist of TRPV1 channel bradykinin and capsaicin. The RTX-treated group had a significantly lower LV pressure (LVP) response in the application of bradykinin and capsaicin, indicating that elimination of cardiac sympathetic afferent reflex was accomplished by RTX application in each case.
SG Neural Recordings and Experimental Protocol
For each animal, a 16-channel, linear, single shank microelectrode array (LMA, Microprobes, Gaithersburg, MD) was inserted in the craniomedial pole of the left stellate ganglion (Fig. 1A). The LMA consisted of a polyimide tube of 0mm that contains recording sites, and a stainless steel tip of 1mm (Fig. 1B). Polyimide tube hosted a total of 16 platinum-iridium recording sites with 25μm radius, separated by 500μm intra-electrode spacing. A microelectrode amplifier (Model 3600, A-M Systems, Carlsborg, WA) was used to amplify (gain of 1000 − 2500) and filter (300Hz − 3kHz band-pass filter) the acquired signals. The signals were transferred to a data acquisition platform (Power 1401, Cambridge Electronic Design, Cambridge, UK) and recorded using Spike2 software (Cambridge Electronic Design, Cambridge, UK). All data were processed in Python and MATLAB. Increases in spike rate occur within 90-minutes of electrode insertion, hence a stabilization time of approximately three hours is required after the insertion takes place (Sudarshan et al., 2021).
It should be noted that our study deals with multi-electrode recordings of the closest neural populations to the electrode array. The earliest fundamental studies probing into cardiac nervous system used single-unit recordings, for which the target neurons should be isolated and appropriate low-impedance conductors should be used for obtaining high quality neural signals. Unlike these early studies, we used multi-unit (16-channel) electrode arrays to monitor the ensemble behaviors of SG neural populations. This experimental shift from single-unit to multi-unit recording has gained interest in the recent years in neurocardiology and neuroscience communities, offering an experimental view to the ensemble behaviors of neural populations (Gurel et al., 2022).
Data Availability
Data is available in the Dryad repository https://datadryad.org/stash/share/nEzGj21D1bUvrBYEtSNATZSAYTW39cBjjmV5RuVveLY
Signal Processing and Time Series Analysis
Signal Processing Pipeline A high-level description of the signal processing pipeline is in Fig. 2. In summary, Pearson’s cross correlation is used to construct the coactivity matrix as the collection of cross correlations between all possible channel pairs. The coactivity matrix is computed at each timestamp and associated with a window of past neural activity (Fig. 2, ‘Coactivity’ block). This computation yields a causal sliding window of coactivity matrices referred to as the ‘coactivity time series’.
Discrete events of high cofluctuation occurring in the coactivity time series are defined using two thresholds: (i) the coactivity time series is mapped to a univariate ‘cofluctuation time series’ where, at each timestamp, the percentage of coactivity matrix members exceeding a threshold C is found, and (ii) discrete ‘events’ are defined as those timestamps when up-crossings of the cofluctuation time series through a second threshold T occur. The method used to choose the (C, T) pair, detailed in this section, generates discrete event timestamps and allows for the computation of the event rate (ER) mean and standard deviation (ST D) statistics, which are used later in the statistical analyses. These cofluctuation events are regions that expose shifts in neural processing within the SG. These events are linked to function through the consideration of how neural specificity differs inside and outside cofluctuation events in control and heart failure animals.
The relationship between a control target such as LVP and neural activity at each channel is quantified via a continuously varying neural specificity (Sudarshan et al., 2021) (Fig. 2, ‘Neural Specificity’ block). The neural specificity is contrastive since it is the difference between the PDF of neural sampling of a target and the same found from random sampling. The neural activity in the SG is known to be a mixture of afferent, efferent, and local circuit activity derived from local circuit neurons with inputs from multiple sources. It in this sense that we define neural computation; when we observe the specificity to the target operating above or below the random sampling limit. Neural specificity is a multivariate signal measured across multiple target states at each channel as a function of time. This is reduced, for each channel, to a univariate time series by constructing its coherence in terms of entropy. The evolution of coherence in time provides access to the dynamics or consistency of neural computation. Detailed information about each signal processing step is provided in this section. The supplementary section contains material detailing the mathematical aspects of the analysis. As stated in the signal processing block diagram, our outcome measures are event rate, entropy, event entropy. These metrics are developed in the Supplementary Material 1.
Unsupervised Spike Detection
We use a competitive, adaptive threshold, unsupervised approach for neural spike detection (Sudarshan et al., 2021). The algorithm initializes plus and minus barriers at the plus or minus signal maximum amplitude. The barriers are respectively lowered or raised until the plus or minus barrier ‘wins the competition’ and is the first to yield a minimal number of crossings. Detected spike regions are masked as a zero signal and the process repeated with barrier sizes further reduced in subsequent iterations. The competition is halted when one barrier is first to reach a minimal barrier height.
Code Availability
Supporting Apache License codes are at GitHub (https://github.com/Koustubh2111/Cofluctuation-and-Entropy-Code-Data).
Dataset and Statistical Analysis
Statistical analyses are performed in MATLAB Statistics & Machine Learning Toolbox (version R2021a) and Python SciPy Library (version 3.8.5).
Sample Size Breakdown
Two channels were excluded from two animals due to insufficient signal quality. Within event rate analyses, all animals had sufficient neural data (n = 17 animals, 6 control, 11 HF). Entropy analyses for 3 HF animals were excluded due to insufficient LVP quality resulting in n = 14 animals (6 control, 8 HF).
Outcome Measures
Within the signal processing pipeline described in Fig. 3, the event rate measures, ERMEAN and ERST D, are used to summarize the cofluctuation time series for each animal. A mean and standard deviation of the 16 channel-wise entropy time series results in 32 measures of entropy per animal (16 for EntropyMEAN and 16 for EntropyST D per animal).
Statistical Analysis
For variables that result in a single number per animal (such as ERMEAN and ERST D, Fig. 4A-B), independent samples t-tests or Wilcoxon rank-sum tests are respectively used for normal or nonnormal data (normality assessed by Shapiro-Wilk) to quantify differences between animal groups. For variables that have multiple variates per animal (such as EntropyMEAN calculated from multiple channels, Fig. 4C-D), mixed effects models are constructed in the MATLAB Statistics and Machine Learning Toolbox (Pinheiro and Bates, 1996; MATLAB, 2021). EntropyMEAN and similarlyEntropyST D (not shown) and EntropyMEAN,EV ENT and similarly EntropyST D,EVENT (not shown) are modelled via mixed effects as, 1| indicates random effects,
In Eq. (2), and depicted in Fig. 4C-D, the computed metric EntropyMEAN is the outcome variable; the animal type (control/HF) a fixed effect; and the channel number (1 − 16) and the animal ID random effects. The analysis of EntropyST D follows by replacing ‘MEAN’ with ‘STD’.
In Eq. (2) the model EntropyMEAN,EV ENT is shown and refers to entropy mean data within event regions where the model for mean entropy data outside event regions is EntropyMEAN,NON−EV ENT. In this way, models are constructed for event / non-event, mean / std entropy as the outcome variable; the event type (event / non-event), the animal type (control / HF), and coactivity computation type (mean / std) are fixed effects; and channel number, animal ID, and entropy (type matching the outcome entropy’s type, mean or std) are random effects.
For all analyses using mixed effects modeling, the β coefficients (fixed effects estimates), pvalues, effect sizes (dRM based on repeated measures Cohen’s dRM, (Lakens, 2013)), 95% confidence intervals (CI) of β coefficients (lower, upper bounds) are reported in results in (β, ±CI, dRM, p) format. The β coefficients indicate the adjusted differences (units matching the outcome variable’s unit) in one group compared to the other. For analyses with independent samples, p-values and independent samples effect sizes (d, based on Cohen’s d) are reported in (p, d) format. For all analyses, a two-sided p < 0.05 denoted statistical significance.
Results
Neural activity was measured over 16 channels along with simultaneous left ventricular pressure (LVP) for approximately six hours of continuous recordings per animal. Representative neural activity recording for a single channel, LVP, and representative spike trains are displayed for control and heart failure animals in Fig. 1A. A total of 17 Yorkshires (6 control, 11 HF, Fig. 1D) underwent the terminal experiment described in Fig. 1E. Upon the signal processing pipeline described above, we computed two event rate measures per animal as the final product representing the cofluctuations (ERMEAN, ERST D). As the metric representing the neural specificity, we computed two entropy measures per channel (EntropyMEAN, EntropyST D), resulting in a total of sixteen EntropyMEAN and sixteen EntropyST D per animal. Finally, we used these metrics to quantify: i) neural population dynamics (i.e., ERMEAN, ERST D), ii) neural specificity to target LVP, or cardiac control (i.e., EntropyMEAN, EntropyST D), and iii) Linkage between neural population dynamics and specificity (i.e., EntropyMEAN,EV ENT, EntropyST D,EV ENT).
Stellate Ganglion in Heart Failure Exhibits High Event Rate
Fig. 4A-B show event rate outcomes grouped by heart failure (HF) models and controls. HF animals show significantly higher event rates compared to control animals for both ERMEAN (p = 0.011, effect size d = 1.59, ERMEAN,HF = 0.0012evts/sec, ERMEAN,Controls = 0.0002evts/sec) and ERST D (p = 0.023, d = 1.48, ERST D,HF = 0.001evts/sec, ERST D,Controls = 0.0001evts/sec). The cofluctuation time series for each animal is depicted in Fig. 6, where the event time series are computed. The ‘events’ or short-lived intervals where high cofluctuations exist are shown as level 1, leading to the event time series in Fig. 7. We observe that the cofluctuations are more localized in HF animals with greater heterogeneity.
HF Animal Models Have Heavy Tailed Cofluctuation Distributions
We qualitatively explored the statistical distribution of the cofluctuation time series. Fig. 5 shows log-normal fits for each animal group for Cof luctuationMEAN and Cof luctuationST D time series, along with 68% confidence interval (CI) bounds, mean of fit (μF IT) and standard deviation of fit (σF IT). Control animals (Fig. 5A-B) exhibit narrow confidence intervals, lower (μF IT) and (σF IT) values, and tighter log-normal fits. In contrast, HF animals (Fig. 5C-D) exhibit wider confidence intervals, higher (μF IT) and (σF IT) values, and poorer log-normal fits. Of note, HF animals have heavy tails ranging further outside of confidence bounds.
Stellate Ganglion Shows Greater Variation in Neural Specificity to LVP in Heart Failure
We next examined the neural specificity to LVP, quantified by entropy measures in Eq. (2). Fig. 4C-D shows EntropyMEAN and EntropyST D, grouped by animals. Compared to the control group, stellate ganglion of HF animals exhibited significantly higher EntropyST D (variation in entropy, Fig. 4D, adjusted β = 0.01 n.u., 95% CI = ±0.01 n.u., dRM = 0.73, p = 0.009). However, there is no significant difference in EntropyMEAN (mean entropy) between animal groups. (Fig. 4C, β = 0.04 n.u., ±0.05 n.u., dRM = 0.82, p = 0.087).
Neural Network Activity and Cardiac Control Linkage Depends on Animal Group and Cofluctuation Magnitude
We explored the nature of cardiac control inside and outside short duration regions of high cofluctuation, i.e. ‘events’, characterized by strongly coherent stellate neural activity patterns. Insight into how these events may be relevant to cardiac control is considered here in the context of how control differs inside and outside events and termed ‘event entropy’.
First, we studied the extent to which event entropy differs inside and outside of events (Fig. 8A, C, event type as fixed effect in Eq. (9)). Second, we studied whether event entropy is sensitive to the animal type characterized here as control or HF (Fig. 8B, D, animal type as fixed effect in Eq. (9)).
Regardless of the animal group,
EntropyMEAN,NON−EV ENT significantly exceeds EntropyMEAN,EV ENT (Fig. 8A, β = 0.007 n.u., ±0.004 n.u., dRM = 0.07, p < 0.001). Similarly, EntropyST D,NON−EV ENT significantly exceeds EntropyST D,EV ENT (Fig. 8C, β = 0.01 n.u., ±0.002 n.u., dRM = 0.29, p < 0.001). An examination of the contribution of each animal group showed no significant difference between groups for EntropyMEAN,EV ENT (Fig. 8B, β = 0.06 n.u., ±0.05 n.u., dRM = 1.13, p = 0.07). On the other hand, HF animals exhibited an increase in EntropyST D,EV ENT compared to control animals (Fig. 8D, β = 0.02 n.u., ±0.02 n.u., dRM = 0.75, p = 0.012). These analyses imply that the linkage between neural network function and cardiac control differs inside and outside of cofluctuation events and between animal groups in the stellate ganglion.
Discussion
In this work, we performed a novel investigation of SG neural population dynamics and neural specificity to continuous left ventricular pressure in control and heart failure Yorkshire pigs. The methods in this work are intended to measure the way population neural activity relates to closedloop control of a target and how that computation changes in diseased states. This was applied here to closed-loop control of cardiac output where the assumed target was LVP.
The methods in this work involved
Neural Specificity A measure of bias in neural activity toward ‘sampling’ of specific target states. The target specificity is a contrastive measure that compares neural sampling of a target relative to random sampling of the same target.
Neural Specificity Coherence Entropy of neural specificity was used to measure coherence of neural specificity as a function of time.
Cofluctuation Events The degree of coactivity in the dynamics of the mean and its standard deviation was measured between pairs of channels from minimum to maximum physical separation and this exposed short duration ‘events’ when cofluctuation was unusually high.
Event Entropy Functional significance of cofluctuation events was evaluated by comparing differences in the degree of neural specificity coherence inside and outside of events.
Prevalence of Short-Lived Cofluctuations in SG Activity in HF
In prior work, we identified neural specificity toward near-peak systole of the LVP waveform in control animals (Sudarshan et al., 2021). Application of this metric and the construction of a related coherence measure provided insight into differences in neural processing dynamics between control and HF animals. Our results show that cardiac control exerted within diseased states has greater variation in entropy and thus less consistency for heart failure animals compared to control animals. This finding may extend to other pathologies for which the cardiac control hierarchy is disrupted.
Neural Network Activity is Linked to Cardiac Control
Based on the effect size (dRM), event entropy magnitude appears to be higher with greater variation observed in HF animals compared to control animals (Fig. 8B-D). This implies a level of increased unpredictability and increased difficulty in cardiac control for animals in heart failure over control animals.
A limitation of this result is that the effect sizes for event versus non-event comparisons are small to medium, which potentially indicates a larger study is necessary to better understand the physiological contributions from event type. Another limitation of the study lies in the absence of multiple-class pathologies (i.e., different heart failure models or other reproducible models) and in the absence of stratified pathologies (i.e., animal models with varying degrees of heart failure). Measurement of these neurocardiac metrics during slow, quasi-static application of clinicallyrelevant stressors (Akeju and Brown, 2017; Chamadia et al., 2019) should provide unique opportunities to investigate unresolved questions. Future studies should focus on expanding the dataset to examine how these metrics change with varying pathologies or varying disease models. We also cannot exclude possible effects of general anesthesia, open chest and open pericardial effects on our findings, though the effects are likely consistent across the groups studied in the same manner.
Conclusion
In this study, we looked, for the first time to our knowledge, at long-term studies of in vivo cardiac control in baseline states. The baseline states provide unique signatures that differentiate animals with heart failure and controls. We discovered the inputs (i.e., neural signals) and outputs (i.e., blood pressure) are linked, which led us to develop metrics to analyze the dynamical state of this networked control (Gurel et al., 2022). The primary observation has been that event-based processing within the stellate ganglion and its relationship to cardiac control is strongly modified by heart failure pathology. Our analysis is pointing to heart failure being best considered as a spectrum rather than a binary state. The magnitude of cofluctuation and neural specificity may give us a measure of the degree of heart failure and insight the extent to which cardiac control is compromised with respect to neural specificity and/or cofluctuation. Future therapies may benefit from being able to infer the degree of heart failure in terms neural markers as represented in this work, in a less invasive way. Intriguing connections involve the alignment of our work with a growing consensus in neuroscience. Spatiotemporal changes in neural activity and linkages with control targets are associated with behavioral changes and the onset and development of specific pathologies. For instance, spatiotemporal brain-wide cofluctuations were reported to reveal major depression vulnerability (Hultman et al., 2018). Neural ensembles were linked to visual stimuli in mice Miller et al. (2014). Another study reported that brain’s functional connectivity is driven by high-amplitude cofluctuations and that these cofluctuations encode subject-specific information during experimental tasks (Esfahlani et al., 2020). Similar cofluctuations were also reported to inform olivary network dynamics in the form of state changes in learning new motor patterns in mice (Wagner et al., 2021). Unique co-activation patterns in spontaneous brain activity indicated a signature for conscious states in mice (Gutierrez-Barragan et al., 2022). Global brain activity has also been linked to higher level social behaviours (Mague et al., 2022). These parallel conclusions in cardiac and neuroscience studies indicate similar experimental methods used to measure neural integration relative to control targets. Such measurements may be instrumental to design and assess the efficacy of neurally-based clinical interventions both at the level of the brain and the stellate ganglion.
Supplementary Material 1
Cofluctuation and Event Rate Definitions
Coactivity Matrix
A 16x16 correlation matrix, 4x4 version is shown in Fig. 3B for n = 4 channels, is used to investigate spatial coherence among neural populations in different regions of the SG spanned by 16 electrodes (Supplementary Fig. 1). The coactivity matrix at each timestamp is found from Pearson’s cross-correlation between all possible pairs of spike rate, causal channel, sliding mean and standard deviation. The sliding mean and standard deviation of spike rate are SpikeRateMEAN and SpikeRateST D, and are on the y-axis of Fig. 3A. These are referred to as ‘spike rate’ in what follows when both are implied. To fix ideas, consider Pearson’s cross correlation coefficient (R) between channels 1 and 2, labeled as R12: namely, the red and blue windows respectively in Fig. 3A. In the coactivity matrix depicted in Fig. 3B, there are n = 4 channels, hence n − 1 = 3 super-diagonals. These are vertically stacked in Fig. 3C at each timestamp beginning with the first super-diagonal as R12, R23, R34. In this way, adjacent channels are placed at the bottom followed by super-diagonals corresponding to 2 and 3 channels of separation. The super-diagonal of the 16-channel LMA electrode correlation matrix has n = 16 channels separated by 500μm and n(n − 1)/2 = 120 possible pairwise correlations (See Supplementary Fig. 1 for an example). This yields 120 rows in the stacked version of the coactivity matrix at each timestamp analogous to the same visualized in Fig. 3C for n = 4 channels.
Cofluctuations and Event Rate
The univariate cofluctuation time series is the percentage of coactivity matrix members, at each timestamp, that exceed a threshold Pearson’s R > C, depicted in Fig. 3D. Discrete events are considered to begin at a time of up-crossing of the univariate cofluctuation time series through a threshold T. Each event ends at a down-crossing some time later, as shown in Fig. 3E. These discrete events capture spatiotemporal zones of high SG coactivity. Up-crossing times are respectively converted to an event rate (ERMEAN, ERST D) for the (SpikeRateMEAN, SpikeRateST D) over a duration where event rate, ER, has units 1/s and (NMEAN, NST D) are the number of upcrossings within the EventsDuration considered.
Cofluctuation Probability Distribution
The cofluctuation time series at each threshold C (as in Fig. 3D) qualitatively approximates a lognormal distribution. The log-normal fits of cofluctuation time series (Fig. 5) are obtained using Python SciPy package, with statistics and random numbers module (scipy.stats) (Virtanen et al., 2020).
Bootstrapping and Selection of Convergent Thresholds
The event rate is calculated based on a pair of thresholds (C, T). The first threshold (C, Fig. 3D) is used to reduce the coactivity time series of matrices to a univariate cofluctuation time series. The univariate series is the percentage of coactivity matrix entries exceeding C at each timestamp. The cofluctuation time series is then used to define regions of high cofluctuation based on intervals where the time series exceeds a second threshold T. These regions are discrete ‘events’ that begin and end when the cofluctuation time series respectively upand down-crosses through T (Fig. 3D). Bootstrapping of the event up-crossing timestamps is used to construct the event rate histogram of a threshold pair (C, T).
These histograms lead to a convergent choice of threshold pairs (C, T). The convergent (C, T) pair is taken as the location in (C, T) space where the confidence interval (CI) width shows apparent convergence. An upper bound on (C, T) is imposed so that there is sufficient data to compute the desired statistics.
The procedure is visualized in Fig. S1A using a surrogate coactivity matrix R. Univariate cofluctuation time series are created from a range of thresholds C that inclusively vary over 60-90% with 15% increments. Discrete events are determined, shown as red up-crossing triangles in Fig. S1 A-B, for each of the thresholds C and considered over an inclusive range 40-90% with 10% increments of event thresholds T. Bootstrapped events provided the associated ER histogram of each (C, T) threshold pair and desired 95% CI width of each animal (Fig. S2A). A convergent (C, T) pair for an animal is provided in Fig. S2B (C, T = 0.9, 90), that converged to a 95% CI width of 0.005. Following this approach, convergent (C, T) pairs and bootstrapped CI widths are listed for each animal in Fig. S2C.
Using these individualized convergent (C, T) pairs, original (i.e., not bootstrapped) data are used to calculate event rates for each animal. Note that event rates are calculated from both spike rate mean and standard deviation coactivity matrices, and referred to as ERMEAN and ERST D. These are then used in statistical analyses (one ERMEAN and one ERST D per animal) as shown in Fig. 2. A similar procedure was performed in the literature using neuroimaging time series data based on Pearson’s R (Esfahlani et al., 2020) however the threshold selection process was qualitative. In this work, we have developed a quantitative approach for threshold selection.
Neural Specificity
The neural specificity metric (Sudarshan et al., 2021), Figs. S3 and S4, is used to evaluate the degree to which neural activity is biased toward control target states taken here as LVP. Briefly, this metric is computed in three stages
1. Neural Sampling
The value of the target state (LVP) is ‘sampled’ at the timestamp of each spike occurrence. This sampling is assumed to approximate a quasi-stationary distribution over a causal (backward in time) sliding window of spiking activity that is updated at each new timestamp. The distribution is approximated as a normalized and sliding histogram of neurally sampled target states (LVP).
2. Random Sampling
The normalized, sliding random sampling histogram is found at each spike occurrence in (1), but based on all available LVP samples within the same causal window referenced in (1), which approximates the random sampling limit.
3. Neural Specificity
The normalized, sliding random sampling histogram (2) is subtracted from its neural sampling counterpart (1) to form the neural specificity contrastive measure.
Subtraction of the random sampling histogram from the neural sampling histogram allows for the discovery of the degree to which neural activity is biased, or specific, toward sampling control target states (LVP here) relative to random sampling. To explain the construction of the metric with LVP, a representative window is shown in Fig. S3A with the spikes shown as green dots over LVP waveform. The following steps outline the construction of the neural specificity metric, A, for a representative LVP window
1. Neural Sampling
Following (Sudarshan et al., 2021), the normalized sliding window histogram of neurally sampled LV Pj at all spike times tJ and taken over M bins is defined for bin k as Eq. (4) approximates the distribution of neural sampling of the target LVP at the green dots over a causal window in Fig. S3A. The resulting normalized histogram shown for one timestamp (green line) in Fig. S3B.
2. Random Sampling
The normalized sliding window histogram at the random sampling limit of LV Pj is computed as in (1), but based on all LVP samples within the same causal window and defined as H(LV Pj)k. This is depicted as sampling of the pink line in Fig. S3A over the same causal window used to describe neural sampling of LVP. The result is shown for one timestamp as the normalized histogram (pink line) in Fig. S3B.
3. Neural Specificity
The neural specificity, AJk, for bin k is AJk is mapped to three levels (less, same, greater) relative to random sampling. These are respectively defined as (−1, 0, 1) and depicted as (purple, teal, yellow) in Fig. S3C and S4A. As such, given the mapping threshold α > 0 it follows that (AJk < −α, AJk < α, AJk > α]) is respectively (−1, 0, 1) implying (less, same, greater) neural specificity relative to random sampling and visually represented as (purple, teal, yellow).
Entropy Definitions
Entropy
The neural specificity is reduced from a multivariate signal to a univariate signal by computing the Shannon entropy at each timestamp of the mapped neural specificity metric (Fig. 2), Eq. (5) mapping description). The entropy of the absolute change between adjacent normalized histogram bins is a measure of coherence in neural specificity. The absolute change in the mapped AJk at time tJ and between adjacent bins (k, k + 1), k = 1, …, m − 1 is the set ΔAJ = (0, 1, 2) with members ΔAJi, i = 1, 2, 3. Using a base 3 logarithm to scale the entropy between 0 and 1, the entropy EJ of the difference in the mapped AJk at each timestamp tJ. This unequally-sampled series is interpolated to the equally-sampled time series E.
Event Entropy
The neural specificity is a measure of specificity, or bias, of neural activity to target states. However, unusually high and short-lived cofluctuations indicate intervals in time, or ‘events’, when coactivity between channel pairs implies that SG processing has undergone sudden changes. Functional relevance of cofluctuation events is found by considering the extent to which neural specificity to the target (LVP here) is similar or different inside and outside these events.
Therefore, the functional relevance of cofluctuations in SG neural activity is examined by breaking the time-evolution of entropy of neural specificity into regions: ‘event’ regions (within event intervals) and ‘non-event’ regions (outside event intervals). The mean and standard deviation of event and non-event entropy time series per channel are computed for each experiment and collectively referred to as ‘event entropy’ where this is convenient.
Acknowledgments
This work was funded by the National Institutes of Health, Office of The Director DP2 OD024323-01 and NHLBI R01 HL159001. NZG was funded by the National Science Foundation American Society of Engineering Education’s Engineering Fellows Postdoctoral Fellowship Award ID #2127509. The authors would like to thank Prof. Jeffrey Ardell for fruitful discussions.
Footnotes
We thank the Reviewing Editor, Senior Editor, and Reviewers for the constructive feedback and suggestions to improve the quality of our manuscript. We have updated our manuscript with the essential and minor revisions requested to the best of our ability and further acknowledged the limitations of the manuscript. In this document, editors and reviewers can see our point by point responses (in blue) and relevant changes in the manuscript with page and line numbers (in red). Summary of Revisions: -Abstract and conclusions have been completely revised. -Mathematical definition figures have been split and captioned in more details -Sections with mathematical explanations have been moved to supplementary material. -Clarifications on the points asked by the reviewers have been added to the manuscript. -Mean values for event rates for control animals and animals with heart failure have been added to the results section.
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