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ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research

J. Michael Harnish, Lucian Li, View ORCID ProfileSanja Rogic, View ORCID ProfileGuillaume Poirier-Morency, Seon-Young Kim, Undiagnosed Diseases Network, View ORCID ProfileKym M. Boycott, View ORCID ProfileMichael F. Wangler, View ORCID ProfileHugo J. Bellen, Philip Hieter, View ORCID ProfilePaul Pavlidis, View ORCID ProfileZhandong Liu, View ORCID ProfileShinya Yamamoto
doi: https://doi.org/10.1101/2021.09.30.462504
J. Michael Harnish
1Department of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX, 77030, USA
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
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Lucian Li
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
3Department of Pediatrics, Division of Neurology and Developmental Neuroscience, BCM, Houston, TX, 77030, USA
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Sanja Rogic
4Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T1Z4, Canada
5Department of Psychiatry, University of British Columbia, Vancouver, BC V6T1Z4, Canada
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Guillaume Poirier-Morency
4Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T1Z4, Canada
5Department of Psychiatry, University of British Columbia, Vancouver, BC V6T1Z4, Canada
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Seon-Young Kim
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
3Department of Pediatrics, Division of Neurology and Developmental Neuroscience, BCM, Houston, TX, 77030, USA
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Kym M. Boycott
6Children’s Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H8L1, Canada
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  • ORCID record for Kym M. Boycott
Michael F. Wangler
1Department of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX, 77030, USA
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
7Development, Disease Models & Therapeutics Graduate Program, BCM, Houston, TX, 77030, USA
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  • ORCID record for Michael F. Wangler
Hugo J. Bellen
1Department of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX, 77030, USA
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
7Development, Disease Models & Therapeutics Graduate Program, BCM, Houston, TX, 77030, USA
8Department of Neuroscience, BCM, Houston, TX, 77030, USA
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Philip Hieter
4Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T1Z4, Canada
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Paul Pavlidis
4Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T1Z4, Canada
5Department of Psychiatry, University of British Columbia, Vancouver, BC V6T1Z4, Canada
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Zhandong Liu
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
3Department of Pediatrics, Division of Neurology and Developmental Neuroscience, BCM, Houston, TX, 77030, USA
9Quantitative and Computational Biosciences Graduate Program, BCM, Houston, TX, 77030, USA
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Shinya Yamamoto
1Department of Molecular and Human Genetics, Baylor College of Medicine (BCM), Houston, TX, 77030, USA
2Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital (TCH), Houston, TX, 77030, USA
7Development, Disease Models & Therapeutics Graduate Program, BCM, Houston, TX, 77030, USA
8Department of Neuroscience, BCM, Houston, TX, 77030, USA
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  • For correspondence: yamamoto@bcm.edu
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Abstract

Next-generation sequencing is a prevalent diagnostic tool for undiagnosed diseases, and has played a significant role in rare disease gene discovery. While this technology resolves some cases, others are given a list of possibly damaging genetic variants necessitating functional studies. Productive collaborations between scientists, clinicians, and patients can help resolve such medical mysteries, and provide insights into in vivo function of human genes. Furthermore, facilitating interactions between scientists and research funders, including non-profit organizations or commercial entities, can dramatically reduce the time to translate discoveries from bench to bedside. Several systems designed to connect clinicians and researchers with a shared gene of interest have been successful. However, these platforms exclude some stakeholders based on their role or geography. Here we describe ModelMatcher, a global online matchmaking tool designed to facilitate cross-disciplinary collaborations, especially between scientists and other stakeholders of rare and undiagnosed disease research. ModelMatcher is integrated into the Rare Diseases Models and Mechanisms Network and Matchmaker Exchange, allowing users to identify potential collaborators in other registries. This living database decreases the time from when a scientist or clinician is making discoveries regarding their genes of interest, to when they identify collaborators and sponsors to facilitate translational and therapeutic research.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://www.modelmatcher.net/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research
J. Michael Harnish, Lucian Li, Sanja Rogic, Guillaume Poirier-Morency, Seon-Young Kim, Undiagnosed Diseases Network, Kym M. Boycott, Michael F. Wangler, Hugo J. Bellen, Philip Hieter, Paul Pavlidis, Zhandong Liu, Shinya Yamamoto
bioRxiv 2021.09.30.462504; doi: https://doi.org/10.1101/2021.09.30.462504
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ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research
J. Michael Harnish, Lucian Li, Sanja Rogic, Guillaume Poirier-Morency, Seon-Young Kim, Undiagnosed Diseases Network, Kym M. Boycott, Michael F. Wangler, Hugo J. Bellen, Philip Hieter, Paul Pavlidis, Zhandong Liu, Shinya Yamamoto
bioRxiv 2021.09.30.462504; doi: https://doi.org/10.1101/2021.09.30.462504

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