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Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis

View ORCID ProfileLei Li, View ORCID ProfileOwen Duncan, View ORCID ProfileDiep R Ganguly, View ORCID ProfileChun Pong Lee, View ORCID ProfilePeter A. Crisp, View ORCID ProfileAkila Wijerathna-Yapa, View ORCID ProfileKarzan Salih, View ORCID ProfileJosua Trösch, View ORCID ProfileBarry J Pogson, View ORCID ProfileA. Harvey Millar
doi: https://doi.org/10.1101/2021.10.03.462903
Lei Li
1Frontiers Science Center for Cell Responses, Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, 300071 Tianjin, China
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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  • For correspondence: lei.li@nankai.edu.cn harvey.millar@uwa.edu.au
Owen Duncan
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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Diep R Ganguly
3Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 2601, Australia
4CSIRO Synthetic Biology Future Science Platform, CSIRO, Action ACT, Australia
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Chun Pong Lee
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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Peter A. Crisp
3Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 2601, Australia
5School of Agriculture and Food Sciences, The University of Queensland, Brisbane QLD 4072, Australia
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Akila Wijerathna-Yapa
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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Karzan Salih
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
6Pharmaceutical Chemistry Department, Medical and Applied Science College, Charmo University, 46023 Chamchamal-Sulaimani, Kurdistan Region, Iraq
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Josua Trösch
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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Barry J Pogson
3Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 2601, Australia
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A. Harvey Millar
2ARC Centre of Excellence in Plant Energy Biology, School of Molecular Science, The University of Western Australia, 6009 Crawley, WA, Australia
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  • For correspondence: lei.li@nankai.edu.cn harvey.millar@uwa.edu.au
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Abstract

Photo-inhibitory high light stress in Arabidopsis leads to increases in markers of protein degradation and transcriptional upregulation of proteases and proteolytic machinery, but proteostasis is largely maintained. We find significant increases in the in vivo degradation rate for specific molecular chaperones, nitrate reductase, glyceraldehyde-3 phosphate dehydrogenase, and phosphoglycerate kinase and other plastid, mitochondrial, peroxisomal, and cytosolic enzymes involved in redox shuttles. Coupled analysis of protein degradation rates, mRNA levels, and protein abundance reveal that 57% of the nuclear-encoded enzymes with higher degradation rates also had high light-induced transcriptional responses to maintain proteostasis. In contrast, plastid-encoded proteins with enhanced degradation rates showed decreased transcript abundances and must maintain protein abundance by other processes. This analysis reveals a light-induced transcriptional program for nuclear-encoded genes, beyond the regulation of PSII D1 subunit and the function of PSII, to replace key protein degradation targets in plants and ensure proteostasis under high light stress.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
Lei Li, Owen Duncan, Diep R Ganguly, Chun Pong Lee, Peter A. Crisp, Akila Wijerathna-Yapa, Karzan Salih, Josua Trösch, Barry J Pogson, A. Harvey Millar
bioRxiv 2021.10.03.462903; doi: https://doi.org/10.1101/2021.10.03.462903
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Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
Lei Li, Owen Duncan, Diep R Ganguly, Chun Pong Lee, Peter A. Crisp, Akila Wijerathna-Yapa, Karzan Salih, Josua Trösch, Barry J Pogson, A. Harvey Millar
bioRxiv 2021.10.03.462903; doi: https://doi.org/10.1101/2021.10.03.462903

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