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CircHIPK3 dysregulation of the miR-30c/DLL4 axis is essential for KSHV lytic replication

View ORCID ProfileKatherine L. Harper, View ORCID ProfileTimothy J. Mottram, Chinedu A. Anene, Becky Foster, Molly R. Patterson, Euan McDonnell, Andrew Macdonald, David Westhead, View ORCID ProfileAdrian Whitehouse
doi: https://doi.org/10.1101/2021.10.07.463491
Katherine L. Harper
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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  • For correspondence: A.Whitehouse@leeds.ac.uk bs14klh@leeds.ac.uk
Timothy J. Mottram
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Chinedu A. Anene
2Centre for Cancer Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ
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Becky Foster
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Molly R. Patterson
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Euan McDonnell
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Andrew Macdonald
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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David Westhead
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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Adrian Whitehouse
1School of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
3Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 6140, South Africa
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  • For correspondence: A.Whitehouse@leeds.ac.uk bs14klh@leeds.ac.uk
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Abstract

Non-coding RNA (ncRNA) regulatory networks are emerging as critical regulators of gene expression. These intricate networks of ncRNA:ncRNA interactions modulate multiple cellular pathways and impact the development and progression of multiple diseases. Herpesviruses, including Kaposi’s sarcoma-associated herpesvirus, are adept at utilising ncRNAs, encoding their own as well as dysregulating host ncRNAs to modulate virus gene expression and the host response to infection. Research has mainly focused on unidirectional ncRNA-mediated regulation of target protein-coding transcripts; however, we have identified a novel host ncRNA regulatory network essential for KSHV lytic replication in B cells. KSHV-mediated upregulation of the host cell circRNA, circHIPK3, is a key component of this network, functioning as a competing endogenous RNA of miR-30c, leading to increased levels of the miR-30c target, DLL4. Dysregulation of this network highlights a novel mechanism of cell cycle control during KSHV lytic replication in B cells. Importantly, disruption at any point within this novel ncRNA regulatory network has a detrimental effect on KSHV lytic replication, highlighting the essential nature of this network and potential for therapeutic intervention.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 08, 2021.
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CircHIPK3 dysregulation of the miR-30c/DLL4 axis is essential for KSHV lytic replication
Katherine L. Harper, Timothy J. Mottram, Chinedu A. Anene, Becky Foster, Molly R. Patterson, Euan McDonnell, Andrew Macdonald, David Westhead, Adrian Whitehouse
bioRxiv 2021.10.07.463491; doi: https://doi.org/10.1101/2021.10.07.463491
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CircHIPK3 dysregulation of the miR-30c/DLL4 axis is essential for KSHV lytic replication
Katherine L. Harper, Timothy J. Mottram, Chinedu A. Anene, Becky Foster, Molly R. Patterson, Euan McDonnell, Andrew Macdonald, David Westhead, Adrian Whitehouse
bioRxiv 2021.10.07.463491; doi: https://doi.org/10.1101/2021.10.07.463491

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