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Single-cell analysis of basal cell carcinoma reveals heat shock proteins promote tumor growth in response to WNT5A-mediated inflammatory signals

Christian F. Guerrero-Juarez, Gun Ho Lee, Yingzi Liu, Shuxiong Wang, Yutong Sha, Rachel Y. Chow, Tuyen T.L. Nguyen, Sumaira Aasi, Matthew Karikomi, Michael L. Drummond, Qing Nie, Kavita Sarin, Scott X. Atwood
doi: https://doi.org/10.1101/2021.10.07.463571
Christian F. Guerrero-Juarez
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
2Department of Mathematics, University of California, Irvine, Irvine, CA 92697, USA
3NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, Irvine, CA 92697, USA
4Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA
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Gun Ho Lee
5Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA
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Yingzi Liu
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
3NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, Irvine, CA 92697, USA
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Shuxiong Wang
2Department of Mathematics, University of California, Irvine, Irvine, CA 92697, USA
3NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, Irvine, CA 92697, USA
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Yutong Sha
2Department of Mathematics, University of California, Irvine, Irvine, CA 92697, USA
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Rachel Y. Chow
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
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Tuyen T.L. Nguyen
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
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Sumaira Aasi
5Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA
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Matthew Karikomi
2Department of Mathematics, University of California, Irvine, Irvine, CA 92697, USA
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Michael L. Drummond
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
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Qing Nie
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
2Department of Mathematics, University of California, Irvine, Irvine, CA 92697, USA
3NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, Irvine, CA 92697, USA
4Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA
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Kavita Sarin
5Department of Dermatology, Stanford University School of Medicine, Stanford, CA 94305, USA
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  • For correspondence: satwood@uci.edu ksarin@stanford.edu
Scott X. Atwood
1Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, 92697, USA
3NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, Irvine, CA 92697, USA
4Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA
6Department of Dermatology, University of California, Irvine, Irvine, CA, 92697, USA
7Chao Family Comprehensive Cancer Center, University of California, Irvine, Irvine, CA, 92697, USA
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  • For correspondence: satwood@uci.edu ksarin@stanford.edu
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Abstract

How basal cell carcinoma (BCC) interacts with its tumor microenvironment to promote growth is unclear. Here we use singe-cell RNA sequencing to define the human BCC ecosystem and discriminate between normal and malignant epithelial cells. We identify spatial biomarkers of both tumors and their surrounding stroma that reinforce the heterogeneity of each tissue type. Combining pseudotime, RNA velocity, cellular entropy, and regulon analysis in stromal cells reveal a cancer-specific rewiring of fibroblasts where STAT1, TGF-β, and inflammatory signals induce a non-canonical WNT5A program that maintains the stromal inflammatory state. Cell-cell communication modeling suggests that tumors respond to the sudden burst of fibroblast-specific inflammatory signaling pathways by producing heat shock proteins, which we validated in situ. Finally, dose-dependent treatment with an HSP70 inhibitor suppresses in vitro BCC cell growth and Hedgehog signaling and in vivo tumor growth in a BCC mouse model, validating HSP70’s essential role in tumor growth and reinforcing the critical nature of tumor microenvironment crosstalk in BCC progression.

Competing Interest Statement

The authors have declared no competing interest.

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Posted October 08, 2021.
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Single-cell analysis of basal cell carcinoma reveals heat shock proteins promote tumor growth in response to WNT5A-mediated inflammatory signals
Christian F. Guerrero-Juarez, Gun Ho Lee, Yingzi Liu, Shuxiong Wang, Yutong Sha, Rachel Y. Chow, Tuyen T.L. Nguyen, Sumaira Aasi, Matthew Karikomi, Michael L. Drummond, Qing Nie, Kavita Sarin, Scott X. Atwood
bioRxiv 2021.10.07.463571; doi: https://doi.org/10.1101/2021.10.07.463571
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Single-cell analysis of basal cell carcinoma reveals heat shock proteins promote tumor growth in response to WNT5A-mediated inflammatory signals
Christian F. Guerrero-Juarez, Gun Ho Lee, Yingzi Liu, Shuxiong Wang, Yutong Sha, Rachel Y. Chow, Tuyen T.L. Nguyen, Sumaira Aasi, Matthew Karikomi, Michael L. Drummond, Qing Nie, Kavita Sarin, Scott X. Atwood
bioRxiv 2021.10.07.463571; doi: https://doi.org/10.1101/2021.10.07.463571

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