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Quantifying the scale of genetic diversity extinction in the Anthropocene

View ORCID ProfileMoises Exposito-Alonso, Tom R. Booker, Lucas Czech, Tadashi Fukami, Lauren Gillespie, Shannon Hateley, Christopher C. Kyriazis, Patricia Lang, Laura Leventhal, David Nogues-Bravo, Veronica Pagowski, Megan Ruffley, Jeffrey P. Spence, Sebastian E. Toro Arana, Clemens L. Weiß, Erin Zess.
doi: https://doi.org/10.1101/2021.10.13.464000
Moises Exposito-Alonso
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
2Department of Biology, Stanford University, Stanford, CA 94305, USA
3Department of Global Ecology, Carnegie Institution for Science, Stanford, CA 94305, USA
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  • ORCID record for Moises Exposito-Alonso
  • For correspondence: moisesexpositoalonso@gmail.com
Tom R. Booker
4Department of Zoology, University of British Columbia, Vancouver, Canada
5Biodiversity Research Centre, University of British Columbia, Vancouver, Canada
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Lucas Czech
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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Tadashi Fukami
2Department of Biology, Stanford University, Stanford, CA 94305, USA
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Lauren Gillespie
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
7Department of Computer Science, Stanford University, Stanford, CA 94305, USA
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Shannon Hateley
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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Christopher C. Kyriazis
8Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
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Patricia Lang
2Department of Biology, Stanford University, Stanford, CA 94305, USA
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Laura Leventhal
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
2Department of Biology, Stanford University, Stanford, CA 94305, USA
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David Nogues-Bravo
9Center for Macroecology, Evolution and Climate, GLOBE Inst., Univ. of Copenhagen, Copenhagen, Denmark
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Veronica Pagowski
2Department of Biology, Stanford University, Stanford, CA 94305, USA
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Megan Ruffley
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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Jeffrey P. Spence
6Department of Genetics, Stanford University, Stanford, CA 94305, USA
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Sebastian E. Toro Arana
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
2Department of Biology, Stanford University, Stanford, CA 94305, USA
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Clemens L. Weiß
6Department of Genetics, Stanford University, Stanford, CA 94305, USA
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Erin Zess.
1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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Abstract

More species than ever before are at risk of extinction due to anthropogenic habitat loss and climate change. But even species that are not threatened have seen reductions in their populations and geographic ranges, likely impacting their genetic diversity. Although preserving genetic diversity is a key conservation target to maintain the adaptability of species, we lack predictive tools and global estimates of genetic diversity loss across ecosystems. By bridging biodiversity and population genetics theories, we introduce the first mathematical framework to understand the loss of naturally occurring DNA mutations within a species—what we call genetic diversity extinction. Analyzing genome-wide variation data of 10,126 geo-tagged individuals from 19 plant and animal species, we show that genome-wide diversity follows a power law with geographic area, which can predict genetic diversity decay in simulated spatial extinctions. Given pre-21st century values of ecosystem transformations, we estimate that over 10% of genetic diversity may be extinct, already surpassing the United Nations targets for genetic preservation. These estimated losses could rapidly increase with advancing climate change and habitat destruction, highlighting the need for new forecasting tools that assist in the rapid implementation of policies to protect genetic resources.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted October 15, 2021.
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Quantifying the scale of genetic diversity extinction in the Anthropocene
Moises Exposito-Alonso, Tom R. Booker, Lucas Czech, Tadashi Fukami, Lauren Gillespie, Shannon Hateley, Christopher C. Kyriazis, Patricia Lang, Laura Leventhal, David Nogues-Bravo, Veronica Pagowski, Megan Ruffley, Jeffrey P. Spence, Sebastian E. Toro Arana, Clemens L. Weiß, Erin Zess.
bioRxiv 2021.10.13.464000; doi: https://doi.org/10.1101/2021.10.13.464000
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Quantifying the scale of genetic diversity extinction in the Anthropocene
Moises Exposito-Alonso, Tom R. Booker, Lucas Czech, Tadashi Fukami, Lauren Gillespie, Shannon Hateley, Christopher C. Kyriazis, Patricia Lang, Laura Leventhal, David Nogues-Bravo, Veronica Pagowski, Megan Ruffley, Jeffrey P. Spence, Sebastian E. Toro Arana, Clemens L. Weiß, Erin Zess.
bioRxiv 2021.10.13.464000; doi: https://doi.org/10.1101/2021.10.13.464000

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