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The Endocytic Recycling Compartment Serves as a Viral Factory for Hepatitis E Virus

Cyrine Bentaleb, Kévin Hervouet, Claire Montpellier, Charline Camuzet, Julien Burlaud-Gaillard, Martin Ferrié, Elisabeth Werkmeister, Karoline Metzger, Nancy Leon Janampa, Julien Marlet, Julien Roux, Clarence Deffaud, View ORCID ProfileAnne Goffard, Yves Rouillé, View ORCID ProfileJean Dubuisson, View ORCID ProfilePhilippe Roingeard, Cécile-Marie Aliouat-Denis, View ORCID ProfileLaurence Cocquerel
doi: https://doi.org/10.1101/2021.10.14.464345
Cyrine Bentaleb
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Kévin Hervouet
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Claire Montpellier
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Charline Camuzet
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Julien Burlaud-Gaillard
bInserm U1259. Morphogénèse et Antigénicité du VIH et des Virus des Hépatites (MAVIVH), Université de Tours and CHRU de Tours, 37032 Tours, France
cUniversité de Tours et CHRU de Tours, Plateforme IBiSA de Microscopie Electronique, Tours, France
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Martin Ferrié
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Elisabeth Werkmeister
dUniv. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, UMR2014 - US41 - PLBS-Plateformes Lilloises de Biologie & Santé, Lille, France
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Karoline Metzger
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Nancy Leon Janampa
bInserm U1259. Morphogénèse et Antigénicité du VIH et des Virus des Hépatites (MAVIVH), Université de Tours and CHRU de Tours, 37032 Tours, France
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Julien Marlet
bInserm U1259. Morphogénèse et Antigénicité du VIH et des Virus des Hépatites (MAVIVH), Université de Tours and CHRU de Tours, 37032 Tours, France
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Julien Roux
eBIOTEM, Apprieu, France
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Clarence Deffaud
eBIOTEM, Apprieu, France
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Anne Goffard
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Yves Rouillé
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Jean Dubuisson
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Philippe Roingeard
bInserm U1259. Morphogénèse et Antigénicité du VIH et des Virus des Hépatites (MAVIVH), Université de Tours and CHRU de Tours, 37032 Tours, France
cUniversité de Tours et CHRU de Tours, Plateforme IBiSA de Microscopie Electronique, Tours, France
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Cécile-Marie Aliouat-Denis
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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Laurence Cocquerel
aUniversity of Lille, CNRS, INSERM, CHU Lille, Pasteur Institute of Lille, U1019-UMR 9017-CIIL- Center for Infection and Immunity of Lille, F-59000 Lille, France
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  • ORCID record for Laurence Cocquerel
  • For correspondence: laurence.cocquerel@cnrs.fr
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Abstract

Background & Aims Although Hepatitis E virus (HEV) is the major leading cause of enterically transmitted viral hepatitis worldwide, many gaps remain in the understanding of the HEV lifecycle. Notably, viral factories induced by HEV have not been documented yet and it is currently unknown whether HEV infection leads to cellular membrane modelling as many positive-strand RNA viruses. HEV genome encodes three proteins, the ORF1 replicase, the ORF2 capsid protein and the ORF3 protein involved in virion egress. Previously, we demonstrated that HEV produces different ORF2 isoforms including the virion-associated ORF2i form. Here, we aimed to probe infectious particles and viral factories in HEV-producing cells, using antibodies directed against the different ORF2 isoforms.

Methods We generated monoclonal antibodies that specifically recognize the particle-associated ORF2i form, and antibodies that recognize the different ORF2 isoforms. We used them in confocal and electron microscopy approaches to probe viral factories in HEV-producing cells. We performed an extensive colocalization study of viral proteins with subcellular markers. We analyzed the impact of silencing Rab11, a central player of the endocytic recycling compartment (ERC).

Results One of the antibodies, named P1H1 and targeting the N-terminus of ORF2i, recognized delipidated HEV particles. Confocal and ultrastructural microscopy analyses of HEV-producing cells revealed an unprecedented HEV-induced membrane network containing tubular and vesicular structures. These subcellular structures were enriched in ORF2 and ORF3 proteins, and were dependent on the ORF3 expression and ORF2i capsid protein assembly. Colocalization and silencing analyses revealed that these structures are derived from the ERC.

Conclusions Our study reveals that HEV hijacks the ERC and forms a membrane network of vesicular and tubular structures that might be the hallmark of HEV infection.

Lay summary Hepatitis E virus (HEV) is the leading cause of acute hepatitis worldwide but many steps of its lifecycle are still elusive. Thanks to the development of new antibodies that recognize the different forms of the HEV capsid protein, we were able to visualize vesicular and tubular structures that were established by the virus in the host cell. In addition, extensive efforts to identify these structures led us to conclude that HEV hijacks the endocytic recycling compartment of the cell to form this network of vesicles and tubules, which might be the hallmark of HEV infection.

Competing Interest Statement

CM, JD and LC are coinventors of two patent applications on the use of antibodies having specificity for the ORF2i protein for HEV diagnostic purposes. Patents have been filed by Inserm-Transfert. JR and CD are employees of the BIOTEM company. The authors have no other potential conflict of interest.

Footnotes

  • Conflict of interest: CM, JD and LC are coinventors of two patent applications on the use of antibodies having specificity for the ORF2i protein for HEV diagnostic purposes. Patents have been filed by Inserm-Transfert. JR and CD are employees of the BIOTEM company. The authors have no other potential conflict of interest.

  • Financial support: This work has been funded by Inserm-Transfert (MAT-PI-17006), Pasteur Institute of Lille (DiagHepE), Region Hauts-de-France (DiagHepE), ANRS and the University of Tours.

  • Abbreviations

    aa
    amino acid
    ARM
    Arginine-Rich Motif
    EEA1
    Early Endosome Antigen-
    EHD
    Eps15 homology domain
    eHEV
    enveloped HEV
    EM
    Electron Microscopy
    ER
    Endoplasmic Reticulum
    ERC
    Endocytic-Recycling Compartment
    ERGIC
    Endoplasmic Reticulum-Golgi Intermediate Compartment
    ESCRT
    Endosomal Sorting Complexes Required for Transport
    GA
    Golgi apparatus
    gt
    genotype
    HD
    Heat-denatured
    HEV
    Hepatitis E Virus
    IAV
    Influenza A virus
    IF
    Immunofluorescence
    IG
    Immunogold
    IP
    Immunoprecipitation
    MICAL-L1
    Molecule Interacting with CasL-like1
    MOC
    Mander’s Overlap Coefficient
    MTOC
    Microtubule-Organizing Center
    MVB
    Multivesicular Bodies
    ORF
    Open Reading Frame
    ORF2c
    cleaved ORF2
    ORF2g
    glycosylated ORF2
    ORF2i
    infectious ORF2
    PACSIN2
    Protein Kinase C and Casein Kinase Substrate in Neurons 2
    p.e.
    post-electroporation
    PMP70
    70-kDa Peroxisomal Membrane Protein
    qIP
    immunoprecipitation followed by RT-qPCR
    siRNA
    small interfering RNA
    SN
    Supernatant
    TRE
    Tubular-Recycling Endosome
    TrF
    Transferrin
    TX
    Triton X-100
    WB
    Western Blotting
  • Copyright 
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    The Endocytic Recycling Compartment Serves as a Viral Factory for Hepatitis E Virus
    Cyrine Bentaleb, Kévin Hervouet, Claire Montpellier, Charline Camuzet, Julien Burlaud-Gaillard, Martin Ferrié, Elisabeth Werkmeister, Karoline Metzger, Nancy Leon Janampa, Julien Marlet, Julien Roux, Clarence Deffaud, Anne Goffard, Yves Rouillé, Jean Dubuisson, Philippe Roingeard, Cécile-Marie Aliouat-Denis, Laurence Cocquerel
    bioRxiv 2021.10.14.464345; doi: https://doi.org/10.1101/2021.10.14.464345
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    The Endocytic Recycling Compartment Serves as a Viral Factory for Hepatitis E Virus
    Cyrine Bentaleb, Kévin Hervouet, Claire Montpellier, Charline Camuzet, Julien Burlaud-Gaillard, Martin Ferrié, Elisabeth Werkmeister, Karoline Metzger, Nancy Leon Janampa, Julien Marlet, Julien Roux, Clarence Deffaud, Anne Goffard, Yves Rouillé, Jean Dubuisson, Philippe Roingeard, Cécile-Marie Aliouat-Denis, Laurence Cocquerel
    bioRxiv 2021.10.14.464345; doi: https://doi.org/10.1101/2021.10.14.464345

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