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A multimodal imaging and analysis pipeline for creating a cellular census of the human cerebral cortex
View ORCID ProfileIrene Costantini, Leah Morgan, Jiarui Yang, Yael Balbastre, Divya Varadarajan, Luca Pesce, Marina Scardigli, Giacomo Mazzamuto, Vladislav Gavryusev, Filippo Maria Castelli, Matteo Roffilli, Ludovico Silvestri, Jessie Laffey, Sophia Raia, Merina Varghese, Bridget Wicinski, Shuaibin Chang, Anderson Chen I-Chun, Hui Wang, Devani Cordero, Matthew Vera, Jackson Nolan, Kim Nestor, Jocelyn Mora, Juan Eugenio Iglesias, Erendira Garcia Pallares, Kathryn Evancic, Jean Augustinack, Morgan Fogarty, Adrian V. Dalca, Matthew Frosch, Caroline Magnain, Robert Frost, Andre van der Kouwe, Shih-Chi Chen, David A. Boas, Francesco Saverio Pavone, Bruce Fischl, Patrick R. Hof
doi: https://doi.org/10.1101/2021.10.20.464979
Irene Costantini
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
2Department of Biology, University of Florence, Italy
3National Institute of Optics (INO), National Research Council (CNR), Italy
Leah Morgan
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Jiarui Yang
6Boston University, Department of Biomedical Engineering, Boston, USA
Yael Balbastre
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Divya Varadarajan
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Luca Pesce
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
Marina Scardigli
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
7Department of Physics and Astronomy, University of Florence, Sesto Fiorentino (FI), Italy
Giacomo Mazzamuto
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
3National Institute of Optics (INO), National Research Council (CNR), Italy
Vladislav Gavryusev
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
7Department of Physics and Astronomy, University of Florence, Sesto Fiorentino (FI), Italy
Filippo Maria Castelli
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
7Department of Physics and Astronomy, University of Florence, Sesto Fiorentino (FI), Italy
Matteo Roffilli
8Bioretics srl, Cesena, Italy
Ludovico Silvestri
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
3National Institute of Optics (INO), National Research Council (CNR), Italy
7Department of Physics and Astronomy, University of Florence, Sesto Fiorentino (FI), Italy
Jessie Laffey
9Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Sophia Raia
9Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Merina Varghese
9Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Bridget Wicinski
9Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Shuaibin Chang
10Boston University, Department of Electrical and Computer Engineering, Boston, USA
Anderson Chen I-Chun
6Boston University, Department of Biomedical Engineering, Boston, USA
Hui Wang
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Devani Cordero
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Matthew Vera
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Jackson Nolan
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Kim Nestor
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Jocelyn Mora
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Juan Eugenio Iglesias
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
11Department of Medical Physics and Biomedical Engineering, University College London, London, UK
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
Erendira Garcia Pallares
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Kathryn Evancic
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Jean Augustinack
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Morgan Fogarty
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Adrian V. Dalca
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
Matthew Frosch
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
Caroline Magnain
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Robert Frost
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Andre van der Kouwe
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
Shih-Chi Chen
13The Chinese University of Hong Kong, Department of Mechanical Engineering, Hong Kong Special Administrative Region, China
David A. Boas
6Boston University, Department of Biomedical Engineering, Boston, USA
Francesco Saverio Pavone
1European Laboratory for Non-linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino (FI), Italy
3National Institute of Optics (INO), National Research Council (CNR), Italy
7Department of Physics and Astronomy, University of Florence, Sesto Fiorentino (FI), Italy
Bruce Fischl
4Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
5Department of Radiology, Harvard Medical School, Boston, MA, USA
12Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
14HST, Massachusetts Institute of Technology, Cambridge, MA, USA
Patrick R. Hof
9Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
Posted October 21, 2021.
A multimodal imaging and analysis pipeline for creating a cellular census of the human cerebral cortex
Irene Costantini, Leah Morgan, Jiarui Yang, Yael Balbastre, Divya Varadarajan, Luca Pesce, Marina Scardigli, Giacomo Mazzamuto, Vladislav Gavryusev, Filippo Maria Castelli, Matteo Roffilli, Ludovico Silvestri, Jessie Laffey, Sophia Raia, Merina Varghese, Bridget Wicinski, Shuaibin Chang, Anderson Chen I-Chun, Hui Wang, Devani Cordero, Matthew Vera, Jackson Nolan, Kim Nestor, Jocelyn Mora, Juan Eugenio Iglesias, Erendira Garcia Pallares, Kathryn Evancic, Jean Augustinack, Morgan Fogarty, Adrian V. Dalca, Matthew Frosch, Caroline Magnain, Robert Frost, Andre van der Kouwe, Shih-Chi Chen, David A. Boas, Francesco Saverio Pavone, Bruce Fischl, Patrick R. Hof
bioRxiv 2021.10.20.464979; doi: https://doi.org/10.1101/2021.10.20.464979
A multimodal imaging and analysis pipeline for creating a cellular census of the human cerebral cortex
Irene Costantini, Leah Morgan, Jiarui Yang, Yael Balbastre, Divya Varadarajan, Luca Pesce, Marina Scardigli, Giacomo Mazzamuto, Vladislav Gavryusev, Filippo Maria Castelli, Matteo Roffilli, Ludovico Silvestri, Jessie Laffey, Sophia Raia, Merina Varghese, Bridget Wicinski, Shuaibin Chang, Anderson Chen I-Chun, Hui Wang, Devani Cordero, Matthew Vera, Jackson Nolan, Kim Nestor, Jocelyn Mora, Juan Eugenio Iglesias, Erendira Garcia Pallares, Kathryn Evancic, Jean Augustinack, Morgan Fogarty, Adrian V. Dalca, Matthew Frosch, Caroline Magnain, Robert Frost, Andre van der Kouwe, Shih-Chi Chen, David A. Boas, Francesco Saverio Pavone, Bruce Fischl, Patrick R. Hof
bioRxiv 2021.10.20.464979; doi: https://doi.org/10.1101/2021.10.20.464979
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