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GATA4 regionalizes intestinal metabolism and barrier function to prevent immunopathology

View ORCID ProfileZachary M. Earley, View ORCID ProfileWioletta Lisicka, View ORCID ProfileJoseph J. Sifakis, Raúl Aguirre-Gamboa, Anita Kowalczyk, View ORCID ProfileJacob T. Barlow, View ORCID ProfileDustin G. Shaw, View ORCID ProfileValentina Discepolo, View ORCID ProfileIneke L. Tan, View ORCID ProfileSaideep Gona, Jordan D. Ernest, Polly Matzinger, View ORCID ProfileLuis B. Barreiro, Andriy Morgun, View ORCID ProfileAlbert Bendelac, View ORCID ProfileRustem F. Ismagilov, View ORCID ProfileNatalia Shulzhenko, View ORCID ProfileSamantha J. Riesenfeld, View ORCID ProfileBana Jabri
doi: https://doi.org/10.1101/2021.10.28.466194
Zachary M. Earley
1Committee on Immunology, University of Chicago, Chicago, IL, USA
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Wioletta Lisicka
1Committee on Immunology, University of Chicago, Chicago, IL, USA
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Joseph J. Sifakis
3Department of Chemistry, University of Chicago, Chicago, IL, USA
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Raúl Aguirre-Gamboa
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Anita Kowalczyk
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Jacob T. Barlow
4Division of Biology and Biological Engineering, California Institute of Technology, CA, USA
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Dustin G. Shaw
1Committee on Immunology, University of Chicago, Chicago, IL, USA
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Valentina Discepolo
5Department of Medical Translational Sciences and European Laboratory for the Investigation of Food Induced Diseases, University of Federico II, Naples, IT
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Ineke L. Tan
6Department of Gastroenterology and Hepatology, University of Groningen and University of Medical Center Groningen, Groningen, NL
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Saideep Gona
7Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA
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Jordan D. Ernest
2Department of Medicine, University of Chicago, Chicago, IL, USA
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Polly Matzinger
8Ghost Lab. National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
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Luis B. Barreiro
1Committee on Immunology, University of Chicago, Chicago, IL, USA
2Department of Medicine, University of Chicago, Chicago, IL, USA
7Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA
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Andriy Morgun
9College of Pharmacy, Oregon State University, Corvallis, OR, USA
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Albert Bendelac
1Committee on Immunology, University of Chicago, Chicago, IL, USA
10Department of Pathology, University of Chicago, Chicago, IL, USA
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Rustem F. Ismagilov
4Division of Biology and Biological Engineering, California Institute of Technology, CA, USA
11Division of Chemistry and Chemical Engineering, California Institute of Technology, CA, USA
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Natalia Shulzhenko
12Department of Biomedical Sciences, Oregon State University, Corvallis, OR, USA
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Samantha J. Riesenfeld
13Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA
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  • ORCID record for Samantha J. Riesenfeld
Bana Jabri
1Committee on Immunology, University of Chicago, Chicago, IL, USA
2Department of Medicine, University of Chicago, Chicago, IL, USA
10Department of Pathology, University of Chicago, Chicago, IL, USA
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  • For correspondence: bjabri@bsd.uchicago.edu
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Summary

Different regions of the gastrointestinal tract have distinct digestive and absorptive functions, which may be locally disrupted by infection or autoimmune disease. Yet, the mechanisms underlying intestinal regionalization and its dysregulation in disease are not well understood. Here, we used mouse models, transcriptomics, and immune profiling to show that regional epithelial expression of the transcription factor GATA4 prevented adherent bacterial colonization and inflammation in the proximal small intestine by regulating retinol metabolism and luminal IgA. Loss of epithelial GATA4 expression increased mortality in mice infected with Citrobacter rodentium. In active celiac patients with villous atrophy, low GATA4 expression was associated with metabolic alterations, mucosal Actinobacillus, and increased IL-17 immunity. This study reveals broad impacts of GATA4-regulated intestinal regionalization and highlights an elaborate interdependence of intestinal metabolism, immunity, and microbiota in homeostasis and disease.

One-sentence summary Epithelial GATA4 regulates intestinal regionalization of bacterial colonization, metabolic pathways, and tissue immunity.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 11, 2022.
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GATA4 regionalizes intestinal metabolism and barrier function to prevent immunopathology
Zachary M. Earley, Wioletta Lisicka, Joseph J. Sifakis, Raúl Aguirre-Gamboa, Anita Kowalczyk, Jacob T. Barlow, Dustin G. Shaw, Valentina Discepolo, Ineke L. Tan, Saideep Gona, Jordan D. Ernest, Polly Matzinger, Luis B. Barreiro, Andriy Morgun, Albert Bendelac, Rustem F. Ismagilov, Natalia Shulzhenko, Samantha J. Riesenfeld, Bana Jabri
bioRxiv 2021.10.28.466194; doi: https://doi.org/10.1101/2021.10.28.466194
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GATA4 regionalizes intestinal metabolism and barrier function to prevent immunopathology
Zachary M. Earley, Wioletta Lisicka, Joseph J. Sifakis, Raúl Aguirre-Gamboa, Anita Kowalczyk, Jacob T. Barlow, Dustin G. Shaw, Valentina Discepolo, Ineke L. Tan, Saideep Gona, Jordan D. Ernest, Polly Matzinger, Luis B. Barreiro, Andriy Morgun, Albert Bendelac, Rustem F. Ismagilov, Natalia Shulzhenko, Samantha J. Riesenfeld, Bana Jabri
bioRxiv 2021.10.28.466194; doi: https://doi.org/10.1101/2021.10.28.466194

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