Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

orthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

View ORCID ProfileJacob L. Steenwyk, Dayna C. Goltz, View ORCID ProfileThomas J. Buida III, View ORCID ProfileYuanning Li, View ORCID ProfileXing-Xing Shen, View ORCID ProfileAntonis Rokas
doi: https://doi.org/10.1101/2021.10.30.466607
Jacob L. Steenwyk
1Vanderbilt University, Department of Biological Sciences, VU Station B #35-1634, Nashville, TN 37235, United States of America
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jacob L. Steenwyk
  • For correspondence: jacob.steenwyk@vanderbilt.edu antonis.rokas@vanderbilt.edu
Dayna C. Goltz
22312 Elliston Place #510, Nashville, TN 37203, United States of America
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Thomas J. Buida III
39 City Place #312, Nashville, TN 37209, United States of America
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Thomas J. Buida III
Yuanning Li
1Vanderbilt University, Department of Biological Sciences, VU Station B #35-1634, Nashville, TN 37235, United States of America
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yuanning Li
Xing-Xing Shen
4Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Xing-Xing Shen
Antonis Rokas
1Vanderbilt University, Department of Biological Sciences, VU Station B #35-1634, Nashville, TN 37235, United States of America
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Antonis Rokas
  • For correspondence: jacob.steenwyk@vanderbilt.edu antonis.rokas@vanderbilt.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/2021.10.30.466607
History 
  • November 2, 2021.

Article Versions

  • You are currently viewing Version 1 of this article (November 2, 2021 - 14:50).
  • View Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. Jacob L. Steenwyk1,*,
  2. Dayna C. Goltz2,
  3. Thomas J. Buida III3,
  4. Yuanning Li1,
  5. Xing-Xing Shen4 and
  6. Antonis Rokas1,*
  1. 1Vanderbilt University, Department of Biological Sciences, VU Station B #35-1634, Nashville, TN 37235, United States of America
  2. 22312 Elliston Place #510, Nashville, TN 37203, United States of America
  3. 39 City Place #312, Nashville, TN 37209, United States of America
  4. 4Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
  1. ↵*Correspondence should be addressed to: jacob.steenwyk{at}vanderbilt.edu or antonis.rokas{at}vanderbilt.edu
Back to top
PreviousNext
Posted November 02, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
orthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
orthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Jacob L. Steenwyk, Dayna C. Goltz, Thomas J. Buida III, Yuanning Li, Xing-Xing Shen, Antonis Rokas
bioRxiv 2021.10.30.466607; doi: https://doi.org/10.1101/2021.10.30.466607
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
orthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Jacob L. Steenwyk, Dayna C. Goltz, Thomas J. Buida III, Yuanning Li, Xing-Xing Shen, Antonis Rokas
bioRxiv 2021.10.30.466607; doi: https://doi.org/10.1101/2021.10.30.466607

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Evolutionary Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4078)
  • Biochemistry (8750)
  • Bioengineering (6467)
  • Bioinformatics (23314)
  • Biophysics (11718)
  • Cancer Biology (9133)
  • Cell Biology (13227)
  • Clinical Trials (138)
  • Developmental Biology (7403)
  • Ecology (11359)
  • Epidemiology (2066)
  • Evolutionary Biology (15076)
  • Genetics (10390)
  • Genomics (14000)
  • Immunology (9109)
  • Microbiology (22025)
  • Molecular Biology (8772)
  • Neuroscience (47312)
  • Paleontology (350)
  • Pathology (1418)
  • Pharmacology and Toxicology (2480)
  • Physiology (3701)
  • Plant Biology (8043)
  • Scientific Communication and Education (1427)
  • Synthetic Biology (2206)
  • Systems Biology (6009)
  • Zoology (1247)