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A feedback loop between heterochromatin and the nucleopore complex controls germ-cell to oocyte transition during Drosophila oogenesis

Kahini Sarkar, Noor M Kotb, Alex Lemus, Elliot T Martin, Alicia McCarthy, Justin Camacho, Ayman Iqbal, Alex M. Valm, Morgan A Sammons, Prashanth Rangan
doi: https://doi.org/10.1101/2021.10.31.466575
Kahini Sarkar
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Noor M Kotb
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
2Department of Biomedical Sciences, The School of Public Health, University at Albany SUNY, Albany, NY 12222
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Alex Lemus
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Elliot T Martin
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Alicia McCarthy
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Justin Camacho
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Ayman Iqbal
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Alex M. Valm
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Morgan A Sammons
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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Prashanth Rangan
1Department of Biological Sciences/RNA Institute, University at Albany SUNY, Albany, NY 12222
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  • For correspondence: prangan@albany.edu
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Summary

Germ cells differentiate into oocytes that become totipotent upon fertilization. How the highly specialized oocyte acquires this distinct cell fate is poorly understood. During Drosophila oogenesis, H3K9me3 histone methyltransferase SETDB1 translocates from the cytoplasm to the nucleus of germ cells concurrent with oocyte specification. Here, we discovered that nuclear SETDB1 is required to silence a cohort of differentiation-promoting genes by mediating their heterochromatinization. Intriguingly, SETDB1 is also required for the upregulation of 18 of the ~30 nucleoporins (Nups) that comprise the nucleopore complex (NPC). NPCs in turn anchor SETDB1-dependent heterochromatin at the nuclear periphery to maintain H3K9me3 and gene silencing in the egg chambers. Aberrant gene expression due to loss of SETDB1 or Nups results in loss of oocyte identity, cell death and sterility. Thus, a feedback loop between heterochromatin and NPCs promotes transcriptional reprogramming at the onset of oocyte specification that is critical to establish oocyte identity.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 02, 2021.
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A feedback loop between heterochromatin and the nucleopore complex controls germ-cell to oocyte transition during Drosophila oogenesis
Kahini Sarkar, Noor M Kotb, Alex Lemus, Elliot T Martin, Alicia McCarthy, Justin Camacho, Ayman Iqbal, Alex M. Valm, Morgan A Sammons, Prashanth Rangan
bioRxiv 2021.10.31.466575; doi: https://doi.org/10.1101/2021.10.31.466575
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A feedback loop between heterochromatin and the nucleopore complex controls germ-cell to oocyte transition during Drosophila oogenesis
Kahini Sarkar, Noor M Kotb, Alex Lemus, Elliot T Martin, Alicia McCarthy, Justin Camacho, Ayman Iqbal, Alex M. Valm, Morgan A Sammons, Prashanth Rangan
bioRxiv 2021.10.31.466575; doi: https://doi.org/10.1101/2021.10.31.466575

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