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Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer

View ORCID ProfileZhi Yang, View ORCID ProfileKim-Marie A. Dam, Michael D. Bridges, Magnus A.G. Hoffmann, Andrew T. DeLaitsch, Harry B. Gristick, Amelia Escolano, Rajeev Gautam, Malcolm A. Martin, Michel C. Nussenzweig, Wayne L. Hubbell, View ORCID ProfilePamela J. Bjorkman
doi: https://doi.org/10.1101/2021.11.02.466200
Zhi Yang
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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Kim-Marie A. Dam
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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Michael D. Bridges
2Jules Stein Eye Institute, University of California, Los Angeles, CA, USA
3Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
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Magnus A.G. Hoffmann
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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Andrew T. DeLaitsch
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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Harry B. Gristick
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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Amelia Escolano
4Laboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA
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Rajeev Gautam
5Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
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Malcolm A. Martin
5Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
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Michel C. Nussenzweig
4Laboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA
6Howard Hughes Medical Institute, Chevy Chase, MD, USA
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Wayne L. Hubbell
2Jules Stein Eye Institute, University of California, Los Angeles, CA, USA
3Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
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Pamela J. Bjorkman
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA
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  • ORCID record for Pamela J. Bjorkman
  • For correspondence: bjorkman@caltech.edu
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Abstract

Broadly-neutralizing antibodies (bNAbs) against HIV-1 Env can protect from infection. We characterized Ab1303 and Ab1573, neutralizing CD4-binding site (CD4bs) antibodies, isolated from sequentially-immunized macaques. Ab1303/Ab1573 binding was observed only when Env trimers were not constrained in the closed, prefusion conformation. Fab-Env cryo-EM structures showed that both antibodies recognized the CD4bs on Env trimer with an ‘occluded-open’ conformation between closed, as targeted by bNAbs, and fully-open, as recognized by CD4. The occluded-open Env trimer conformation included outwardly-rotated gp120 subunits, but unlike CD4-bound Envs, did not exhibit V1V2 displacement, co-receptor binding site exposure, or a 4-stranded gp120 bridging sheet. Inter-protomer distances within trimers measured by double electron-electron resonance spectroscopy suggested an equilibrium between occluded-open and closed Env conformations, consistent with Ab1303/Ab1573 binding stabilizing an existing conformation. Studies of Ab1303/Ab1573 demonstrate that CD4bs neutralizing antibodies that bind open Env trimers can be raised by immunization, thereby informing immunogen design and antibody therapeutic efforts.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 04, 2021.
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Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer
Zhi Yang, Kim-Marie A. Dam, Michael D. Bridges, Magnus A.G. Hoffmann, Andrew T. DeLaitsch, Harry B. Gristick, Amelia Escolano, Rajeev Gautam, Malcolm A. Martin, Michel C. Nussenzweig, Wayne L. Hubbell, Pamela J. Bjorkman
bioRxiv 2021.11.02.466200; doi: https://doi.org/10.1101/2021.11.02.466200
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Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer
Zhi Yang, Kim-Marie A. Dam, Michael D. Bridges, Magnus A.G. Hoffmann, Andrew T. DeLaitsch, Harry B. Gristick, Amelia Escolano, Rajeev Gautam, Malcolm A. Martin, Michel C. Nussenzweig, Wayne L. Hubbell, Pamela J. Bjorkman
bioRxiv 2021.11.02.466200; doi: https://doi.org/10.1101/2021.11.02.466200

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