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SYMBIOSIS: Synthetic Manipulable Biobricks via Orthogonal Serine Integrase Systems

Fang Ba, Yushi Liu, Wan-Qiu Liu, Xintong Tian, Jian Li
doi: https://doi.org/10.1101/2021.11.03.467214
Fang Ba
School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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Yushi Liu
School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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Wan-Qiu Liu
School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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Xintong Tian
School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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Jian Li
School of Physical Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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  • For correspondence: lijian@shanghaitech.edu.cn
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Abstract

Serine integrases are emerging as one of the most powerful biological tools for synthetic biology. They have been widely used across genome engineering and genetic circuit design. However, developing serine integrase-based tools for directly/precisely manipulating synthetic biobricks is still missing. Here, we report SYMBIOSIS, a versatile method that can robustly manipulate DNA parts in vivo and in vitro. First, we proposed a “Keys match Locks” model to demonstrate that three orthogonal serine integrases are able to irreversibly and stably switch on seven synthetic biobricks with high accuracy in vivo. Then, we demonstrated that purified integrases can facilitate the assembly of “Donor” and “Acceptor” plasmids in vitro to construct composite plasmids. Finally, we used SYMBIOSIS to assemble different chromoprotein genes and create novel colored Escherichia coli. We anticipate that our SYMBIOSIS strategy will accelerate synthetic biobricks manipulation, genetic circuit design, and multiple plasmids assembly for synthetic biology with broad potential applications.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 04, 2021.
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SYMBIOSIS: Synthetic Manipulable Biobricks via Orthogonal Serine Integrase Systems
Fang Ba, Yushi Liu, Wan-Qiu Liu, Xintong Tian, Jian Li
bioRxiv 2021.11.03.467214; doi: https://doi.org/10.1101/2021.11.03.467214
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SYMBIOSIS: Synthetic Manipulable Biobricks via Orthogonal Serine Integrase Systems
Fang Ba, Yushi Liu, Wan-Qiu Liu, Xintong Tian, Jian Li
bioRxiv 2021.11.03.467214; doi: https://doi.org/10.1101/2021.11.03.467214

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