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Complete genome sequence and Benzophenone-3 mineralisation potential of Rhodococcus sp. USK10, a bacterium isolated from riverbank sediment

Joseph Donald Martin, Urse Scheel Krüger, Athanasios Zervas, Morten Dencker Schostag, View ORCID ProfileTue Kjærgaard Nielsen, Jens Aamand, Lars Hestbjerg Hansen, Lea Ellegaard-Jensen
doi: https://doi.org/10.1101/2021.11.04.467327
Joseph Donald Martin
1Department of Environmental Science, Faculty of Technical Science, Aarhus University, Roskilde, Denmark
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Urse Scheel Krüger
2Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen K, Denmark
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Athanasios Zervas
1Department of Environmental Science, Faculty of Technical Science, Aarhus University, Roskilde, Denmark
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Morten Dencker Schostag
2Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen K, Denmark
3Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark
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Tue Kjærgaard Nielsen
4Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
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  • ORCID record for Tue Kjærgaard Nielsen
Jens Aamand
2Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen K, Denmark
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Lars Hestbjerg Hansen
4Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
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Lea Ellegaard-Jensen
1Department of Environmental Science, Faculty of Technical Science, Aarhus University, Roskilde, Denmark
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  • For correspondence: leael@envs.au.dk
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Abstract

Benzophenone-3 (BP3) is an organic UV filter whose presence in the aquatic environment has been linked to detrimental developmental impacts in aquatic organisms such as coral and fish. The genus Rhodococcus has been extensively studied and is known for possessing large genomes housing genes for biodegradation of a wide range of compounds, including aromatic carbons. Here, we present the genome sequence of Rhodococcus sp. USK10, which was isolated from Chinese riverbank sediment and is capable of utilising BP3 as the sole carbon source, resulting in full BP3 mineralisation. The genome consisted of 9,870,030 bp in 3 replicons, a G+C content of 67.2%, and 9,722 coding DNA sequences (CDSs). Annotation of the genome revealed that 179 of these CDSs are involved in metabolism of aromatic carbons. The complete genome of Rhodococcus sp. USK10 is the first complete, annotated genome sequence of a Benzophenone-3 degrading bacterium. Through radiolabelling, it is also the first bacterium proven to mineralise Benzophenone-3. Due to the widespread environmental prevalence of Benzophenone-3, coupled to its adverse impact on aquatic organisms, this characterisation provides an integral first step in better understanding the environmentally relevant degradation pathway of the commonly used UV filter. Given USK10’s ability to completely mineralise Benzophenone-3, it could prove to be a suitable candidate for bioremediation application.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 04, 2021.
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Complete genome sequence and Benzophenone-3 mineralisation potential of Rhodococcus sp. USK10, a bacterium isolated from riverbank sediment
Joseph Donald Martin, Urse Scheel Krüger, Athanasios Zervas, Morten Dencker Schostag, Tue Kjærgaard Nielsen, Jens Aamand, Lars Hestbjerg Hansen, Lea Ellegaard-Jensen
bioRxiv 2021.11.04.467327; doi: https://doi.org/10.1101/2021.11.04.467327
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Complete genome sequence and Benzophenone-3 mineralisation potential of Rhodococcus sp. USK10, a bacterium isolated from riverbank sediment
Joseph Donald Martin, Urse Scheel Krüger, Athanasios Zervas, Morten Dencker Schostag, Tue Kjærgaard Nielsen, Jens Aamand, Lars Hestbjerg Hansen, Lea Ellegaard-Jensen
bioRxiv 2021.11.04.467327; doi: https://doi.org/10.1101/2021.11.04.467327

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