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The extracellular loops of Salmonella Typhimurium outer membrane protein A (OmpA) maintain the stability of Salmonella containing vacuole (SCV) in murine macrophages and protect the bacteria from autophagy-dependent lysosomal degradation

View ORCID ProfileAtish Roy Chowdhury, Dipasree Hajra, Dipshikha Chakravortty
doi: https://doi.org/10.1101/2021.11.07.467609
Atish Roy Chowdhury
1Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, Karnataka, India-560012
2Division of Biological Sciences, Indian Institute of Science, Bangalore, Karnataka, India-560012
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  • ORCID record for Atish Roy Chowdhury
Dipasree Hajra
1Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, Karnataka, India-560012
2Division of Biological Sciences, Indian Institute of Science, Bangalore, Karnataka, India-560012
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Dipshikha Chakravortty
1Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, Karnataka, India-560012
2Division of Biological Sciences, Indian Institute of Science, Bangalore, Karnataka, India-560012
3Centre for Biosystems Science and Engineering, Indian Institute of Science, Bangalore, Karnataka, India-560012.
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  • For correspondence: dipa@iisc.ac.in
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Abstract

After entering the host cells, Salmonella Typhimurium (STM) stays inside a modified membrane-bound compartment called Salmonella containing vacuole (SCV). The biogenesis and stability of SCV are crucial for the intracellular proliferation of Salmonella. Our research has provided a novel mechanistic view on the role of a bacterial porin OmpA in maintaining the stability of SCV. We found that the deletion of OmpA forces the bacteria to escape from the SCV during the immediate early stage of infection. In the absence of OmpA, the bacteria failed to retain the LAMP-1 and came into the host cell’s cytosol. Subsequently, the cytosolic population of STM ΔompA activated the host autophagy machinery after colocalizing with syntaxin 17 and LC3B. The autophagosomes carrying STM ΔompA were targeted to the lysosomes for degradation. Inhibition of autophagy pathway using bafilomycin A1 restored the intracellular proliferation of STM ΔompA. We further showed that the four extracellular loops of OmpA played a crucial role in holding the LAMP-1 pool around the SCV. We have altered the extracellular loop sequences of Salmonella OmpA by site-directed mutagenesis and observed that the bacteria failed to maintain the LAMP-1 pool around the SCV, which finally resulted in their release into the cytosol of the host macrophages. Surprisingly, the cytosolic population of Salmonella having mutations in the extracellular loops of OmpA didn’t activate the lysosomal degradation pathway like STM ΔompA, which helped them to survive within the murine macrophages. In summary, our study revealed an OmpA dependent novel strategy utilized by Salmonella to combat host autophagy by promoting the stability of SCV.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • After entering the host cells, Salmonella Typhimurium (STM) stays inside a modified membrane-bound compartment called Salmonella containing vacuole (SCV). The biogenesis and stability of SCV are crucial for the intracellular proliferation of Salmonella. Our research has provided a novel mechanistic view on the role of a bacterial porin OmpA in maintaining the stability of SCV. We found that the deletion of OmpA forces the bacteria to escape from the SCV during the immediate early stage of infection. In the absence of OmpA, the bacteria failed to retain the LAMP-1 and came into the host cell's cytosol. Subsequently, the cytosolic population of STM ΔompA activated the host autophagy machinery after colocalizing with syntaxin 17 and LC3B. The autophagosomes carrying STM ΔompA were targeted to the lysosomes for degradation. Inhibition of autophagy pathway using bafilomycin A1 restored the intracellular proliferation of STM ΔompA. We further showed that the four extracellular loops of OmpA played a crucial role in holding the LAMP-1 pool around the SCV. We have altered the extracellular loop sequences of Salmonella OmpA by site-directed mutagenesis and observed that the bacteria failed to maintain the LAMP-1 pool around the SCV, which finally resulted in their release into the cytosol of the host macrophages. Surprisingly, the cytosolic population of Salmonella having mutations in the extracellular loops of OmpA did not activate the lysosomal degradation pathway like STM ΔompA, which helped them to survive within the murine macrophages. In summary, our study revealed an OmpA dependent novel strategy utilized by Salmonella to combat host autophagy by promoting the stability of SCV.

  • Abbreviations

    STM
    Salmonella Typhimurium
    OmpA
    Outer membrane protein A
    LC3B
    Microtubule-associated protein 1A/ 1B-light chain 3
    Stx17
    Syntaxin 17
    LLO
    Listeriolysin O
    SCV
    Salmonella containing vacuole
    LAMP-1
    Lysosome associated membrane protein-1
    EEA1
    Early endosome antigen 1
    RFP
    Red fluorescent protein
    GFP
    Green fluorescent protein
    SipC
    Salmonella invasion protein C
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    The extracellular loops of Salmonella Typhimurium outer membrane protein A (OmpA) maintain the stability of Salmonella containing vacuole (SCV) in murine macrophages and protect the bacteria from autophagy-dependent lysosomal degradation
    Atish Roy Chowdhury, Dipasree Hajra, Dipshikha Chakravortty
    bioRxiv 2021.11.07.467609; doi: https://doi.org/10.1101/2021.11.07.467609
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    The extracellular loops of Salmonella Typhimurium outer membrane protein A (OmpA) maintain the stability of Salmonella containing vacuole (SCV) in murine macrophages and protect the bacteria from autophagy-dependent lysosomal degradation
    Atish Roy Chowdhury, Dipasree Hajra, Dipshikha Chakravortty
    bioRxiv 2021.11.07.467609; doi: https://doi.org/10.1101/2021.11.07.467609

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