Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Fast and sensitive GCaMP calcium indicators for imaging neural populations

Yan Zhang, Márton Rózsa, View ORCID ProfileYajie Liang, View ORCID ProfileDaniel Bushey, View ORCID ProfileZiqiang Wei, Jihong Zheng, Daniel Reep, View ORCID ProfileGerard Joey Broussard, Arthur Tsang, Getahun Tsegaye, View ORCID ProfileSujatha Narayan, View ORCID ProfileChristopher J. Obara, Jing-Xuan Lim, Ronak Patel, Rongwei Zhang, View ORCID ProfileMisha B. Ahrens, View ORCID ProfileGlenn C. Turner, View ORCID ProfileSamuel S.-H. Wang, View ORCID ProfileWyatt L. Korff, Eric R. Schreiter, Karel Svoboda, View ORCID ProfileJeremy P. Hasseman, View ORCID ProfileIlya Kolb, View ORCID ProfileLoren L. Looger
doi: https://doi.org/10.1101/2021.11.08.467793
Yan Zhang
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Márton Rózsa
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yajie Liang
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
3Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD 21201
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yajie Liang
Daniel Bushey
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Daniel Bushey
Ziqiang Wei
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ziqiang Wei
Jihong Zheng
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Daniel Reep
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Gerard Joey Broussard
2Princeton Neuroscience Institute, Princeton, NJ 08544
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Gerard Joey Broussard
Arthur Tsang
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Getahun Tsegaye
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sujatha Narayan
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sujatha Narayan
Christopher J. Obara
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Christopher J. Obara
Jing-Xuan Lim
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ronak Patel
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Rongwei Zhang
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Misha B. Ahrens
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Misha B. Ahrens
  • For correspondence: loogerl@hhmi.org svobodak@hhmi.org sswang@Princeton.EDU turnerg@hhmi.org ahrensm@hhmi.org GENIEreagents@janelia.hhmi.org
Glenn C. Turner
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Glenn C. Turner
  • For correspondence: loogerl@hhmi.org svobodak@hhmi.org sswang@Princeton.EDU turnerg@hhmi.org ahrensm@hhmi.org GENIEreagents@janelia.hhmi.org
Samuel S.-H. Wang
2Princeton Neuroscience Institute, Princeton, NJ 08544
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Samuel S.-H. Wang
Wyatt L. Korff
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Wyatt L. Korff
Eric R. Schreiter
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Karel Svoboda
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: loogerl@hhmi.org svobodak@hhmi.org sswang@Princeton.EDU turnerg@hhmi.org ahrensm@hhmi.org GENIEreagents@janelia.hhmi.org
Jeremy P. Hasseman
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jeremy P. Hasseman
  • For correspondence: loogerl@hhmi.org svobodak@hhmi.org sswang@Princeton.EDU turnerg@hhmi.org ahrensm@hhmi.org GENIEreagents@janelia.hhmi.org
Ilya Kolb
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
4Aromyx, Sunnyvale, CA 94043
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ilya Kolb
Loren L. Looger
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Loren L. Looger
  • For correspondence: loogerl@hhmi.org svobodak@hhmi.org sswang@Princeton.EDU turnerg@hhmi.org ahrensm@hhmi.org GENIEreagents@janelia.hhmi.org
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Calcium imaging with protein-based indicators is widely used to follow neural activity in intact nervous systems. The popular GCaMP indicators are based on the calcium-binding protein calmodulin and the RS20 peptide. These sensors report neural activity at timescales much slower than electrical signaling, limited by their biophysical properties and trade-offs between sensitivity and speed. We used large-scale screening and structure-guided mutagenesis to develop and optimize several fast and sensitive GCaMP-type indicators. The resulting ‘jGCaMP8’ sensors, based on calmodulin and a fragment of endothelial nitric oxide synthase, have ultra-fast kinetics (rise times, 2 ms) and still feature the highest sensitivity for neural activity reported for any protein-based sensor. jGCaMP8 sensors will allow tracking of larger populations of neurons on timescales relevant to neural computation.

Competing Interest Statement

YZ, ERS, JPH, IK, and LLL are inventors of US Patent Application 63082222, Genetically Encoded Calcium Indicators and Methods of Use, which covers the jGCaMP8 sensors.

Footnotes

  • We forgot to upload the eight Supplementary Tables with the first submission. They are now here.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted November 10, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Fast and sensitive GCaMP calcium indicators for imaging neural populations
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Fast and sensitive GCaMP calcium indicators for imaging neural populations
Yan Zhang, Márton Rózsa, Yajie Liang, Daniel Bushey, Ziqiang Wei, Jihong Zheng, Daniel Reep, Gerard Joey Broussard, Arthur Tsang, Getahun Tsegaye, Sujatha Narayan, Christopher J. Obara, Jing-Xuan Lim, Ronak Patel, Rongwei Zhang, Misha B. Ahrens, Glenn C. Turner, Samuel S.-H. Wang, Wyatt L. Korff, Eric R. Schreiter, Karel Svoboda, Jeremy P. Hasseman, Ilya Kolb, Loren L. Looger
bioRxiv 2021.11.08.467793; doi: https://doi.org/10.1101/2021.11.08.467793
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Fast and sensitive GCaMP calcium indicators for imaging neural populations
Yan Zhang, Márton Rózsa, Yajie Liang, Daniel Bushey, Ziqiang Wei, Jihong Zheng, Daniel Reep, Gerard Joey Broussard, Arthur Tsang, Getahun Tsegaye, Sujatha Narayan, Christopher J. Obara, Jing-Xuan Lim, Ronak Patel, Rongwei Zhang, Misha B. Ahrens, Glenn C. Turner, Samuel S.-H. Wang, Wyatt L. Korff, Eric R. Schreiter, Karel Svoboda, Jeremy P. Hasseman, Ilya Kolb, Loren L. Looger
bioRxiv 2021.11.08.467793; doi: https://doi.org/10.1101/2021.11.08.467793

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (4384)
  • Biochemistry (9610)
  • Bioengineering (7104)
  • Bioinformatics (24897)
  • Biophysics (12632)
  • Cancer Biology (9974)
  • Cell Biology (14373)
  • Clinical Trials (138)
  • Developmental Biology (7966)
  • Ecology (12126)
  • Epidemiology (2067)
  • Evolutionary Biology (16002)
  • Genetics (10936)
  • Genomics (14756)
  • Immunology (9880)
  • Microbiology (23698)
  • Molecular Biology (9490)
  • Neuroscience (50924)
  • Paleontology (370)
  • Pathology (1541)
  • Pharmacology and Toxicology (2687)
  • Physiology (4023)
  • Plant Biology (8674)
  • Scientific Communication and Education (1511)
  • Synthetic Biology (2402)
  • Systems Biology (6444)
  • Zoology (1346)