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Crystal structure of Arabidopsis thaliana HPPK/DHPS, a bifunctional enzyme and target of the herbicide asulam

View ORCID ProfileGrishma Vadlamani, View ORCID ProfileKirill V. Sukhoverkov, View ORCID ProfileJoel Haywood, View ORCID ProfileKaren J. Breese, View ORCID ProfileMark F. Fisher, View ORCID ProfileKeith A. Stubbs, View ORCID ProfileCharles S. Bond, View ORCID ProfileJoshua S. Mylne
doi: https://doi.org/10.1101/2021.11.10.468163
Grishma Vadlamani
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
2School of Molecular Sciences, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
3Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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Kirill V. Sukhoverkov
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
2School of Molecular Sciences, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
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Joel Haywood
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
2School of Molecular Sciences, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
3Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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Karen J. Breese
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
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Mark F. Fisher
3Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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Keith A. Stubbs
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
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Charles S. Bond
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
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Joshua S. Mylne
1The University of Western Australia, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
2School of Molecular Sciences, The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
3Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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  • For correspondence: josh.mylne@curtin.edu.au
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Abstract

Herbicides are vital for modern agriculture, but their utility is threatened by genetic or metabolic resistance in weeds as well as heightened regulatory scrutiny. Of the known herbicide modes of action, 6-hydroxymethyl-7,8-dihydropterin synthase (DHPS) which is involved in folate biosynthesis, is targeted by just one commercial herbicide, asulam. A mimic of the substrate para-aminobenzoic acid, asulam is chemically similar to sulfonamide antibiotics – and while still in widespread use, asulam has faced regulatory scrutiny. With an entire mode of action represented by just one commercial agrochemical, we sought to improve the understanding of its plant target. Here we solve a 2.6 Å resolution crystal structure for Arabidopsis thaliana DHPS that is conjoined to 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) and reveal a strong structural conservation with bacterial counterparts at the sulfonamide-binding pocket of DHPS. We demonstrate asulam and the antibiotics sulfacetamide and sulfamethoxazole have herbicidal as well as antibacterial activity and explore the structural basis of their potency by modelling these compounds in mitochondrial HPPK/DHPS. Our findings suggest limited opportunity for the rational design of plant selectivity from asulam and that pharmacokinetic or delivery differences between plants and microbes might be the best approaches to safeguard this mode of action.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 12, 2021.
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Crystal structure of Arabidopsis thaliana HPPK/DHPS, a bifunctional enzyme and target of the herbicide asulam
Grishma Vadlamani, Kirill V. Sukhoverkov, Joel Haywood, Karen J. Breese, Mark F. Fisher, Keith A. Stubbs, Charles S. Bond, Joshua S. Mylne
bioRxiv 2021.11.10.468163; doi: https://doi.org/10.1101/2021.11.10.468163
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Crystal structure of Arabidopsis thaliana HPPK/DHPS, a bifunctional enzyme and target of the herbicide asulam
Grishma Vadlamani, Kirill V. Sukhoverkov, Joel Haywood, Karen J. Breese, Mark F. Fisher, Keith A. Stubbs, Charles S. Bond, Joshua S. Mylne
bioRxiv 2021.11.10.468163; doi: https://doi.org/10.1101/2021.11.10.468163

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