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Spatially regulated protease activity in lymph nodes renders B cell follicles a sanctuary for retention of intact antigens

Aereas Aung, Ang Cui, Ava P. Soleimany, Maurice Bukenya, Heya Lee, Christopher A. Cottrell, Murillo Silva, Jesse D. Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Shuhao Xiao, Leah Michelle Froehle, Wuhbet Abraham, Josetta Adams, Heikyung Suh, Phillip Huyett, Douglas S. Kwon, Nir Hacohen, William R. Schief, Sangeeta N. Bhatia, Darrell J. Irvine
doi: https://doi.org/10.1101/2021.11.15.468669
Aereas Aung
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Ang Cui
2Broad Institute of MIT and Harvard, Cambridge, MA, USA
3Harvard-MIT Division of Health Sciences and Technology, MIT, Cambridge, MA, USA
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Ava P. Soleimany
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
3Harvard-MIT Division of Health Sciences and Technology, MIT, Cambridge, MA, USA
4Program in Biophysics, Harvard University, Boston, MA, USA
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Maurice Bukenya
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Heya Lee
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Christopher A. Cottrell
5Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA
7Consortium for HIV/AIDS Vaccine Development, The Scripps Research Institute, La Jolla, CA, USA
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Murillo Silva
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Jesse D. Kirkpatrick
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
3Harvard-MIT Division of Health Sciences and Technology, MIT, Cambridge, MA, USA
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Parastoo Amlashi
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Tanaka Remba
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Shuhao Xiao
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Leah Michelle Froehle
8Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA
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Wuhbet Abraham
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Josetta Adams
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Heikyung Suh
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
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Phillip Huyett
11Department of Otolaryngology-Head and Neck Surgery, Massachusetts Eye and Ear Infirmary and Harvard Medical School, Boston, MA, USA
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Douglas S. Kwon
8Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA
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Nir Hacohen
2Broad Institute of MIT and Harvard, Cambridge, MA, USA
6Center for Cancer Research, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
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William R. Schief
7Consortium for HIV/AIDS Vaccine Development, The Scripps Research Institute, La Jolla, CA, USA
8Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA
9Dept. of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA, USA
10IAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA, USA
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Sangeeta N. Bhatia
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
2Broad Institute of MIT and Harvard, Cambridge, MA, USA
3Harvard-MIT Division of Health Sciences and Technology, MIT, Cambridge, MA, USA
12Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA
13Department of Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA
14Wyss Institute at Harvard, Boston, MA, USA
17Howard Hughes Medical Institute, Cambridge, MA, USA
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Darrell J. Irvine
1Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA
7Consortium for HIV/AIDS Vaccine Development, The Scripps Research Institute, La Jolla, CA, USA
8Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA
15Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
16Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
17Howard Hughes Medical Institute, Cambridge, MA, USA
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  • For correspondence: djirvine@mit.edu
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SUMMARY

The structural integrity of vaccine antigens is critical, because antigen breakdown in vivo could eliminate neutralizing epitopes and create competing B cell responses against irrelevant breakdown products. Using FRET imaging and imaging zymography, we found that protease activity and antigen breakdown are spatially heterogeneous in lymph nodes. Following protein immunization, antigens are rapidly degraded in the subcapsular sinus, paracortex, and interfollicular regions of the tissue. By contrast, the follicles and follicular dendritic cell (FDC) networks exhibit low protease activity and antigen degradation rates. Immunization regimens targeting antigen rapidly to FDCs led to germinal centers (GCs) where responses to intact antigen were highly dominant, while traditional bolus immunizations led to weaker GC responses where more GC B cells bound to breakdown products than intact antigen. Thus, spatially-compartmentalized antigen proteolysis impacts humoral immunity and can be exploited to enhance vaccine-induced production of antibody responses against key pathogen structural epitopes.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 15, 2021.
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Spatially regulated protease activity in lymph nodes renders B cell follicles a sanctuary for retention of intact antigens
Aereas Aung, Ang Cui, Ava P. Soleimany, Maurice Bukenya, Heya Lee, Christopher A. Cottrell, Murillo Silva, Jesse D. Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Shuhao Xiao, Leah Michelle Froehle, Wuhbet Abraham, Josetta Adams, Heikyung Suh, Phillip Huyett, Douglas S. Kwon, Nir Hacohen, William R. Schief, Sangeeta N. Bhatia, Darrell J. Irvine
bioRxiv 2021.11.15.468669; doi: https://doi.org/10.1101/2021.11.15.468669
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Spatially regulated protease activity in lymph nodes renders B cell follicles a sanctuary for retention of intact antigens
Aereas Aung, Ang Cui, Ava P. Soleimany, Maurice Bukenya, Heya Lee, Christopher A. Cottrell, Murillo Silva, Jesse D. Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Shuhao Xiao, Leah Michelle Froehle, Wuhbet Abraham, Josetta Adams, Heikyung Suh, Phillip Huyett, Douglas S. Kwon, Nir Hacohen, William R. Schief, Sangeeta N. Bhatia, Darrell J. Irvine
bioRxiv 2021.11.15.468669; doi: https://doi.org/10.1101/2021.11.15.468669

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