Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Fast DNA-PAINT imaging using a deep neural network

View ORCID ProfileKaarjel K. Narayanasamy, Johanna V. Rahm, Siddharth Tourani, Mike Heilemann
doi: https://doi.org/10.1101/2021.11.20.469366
Kaarjel K. Narayanasamy
1Department of Functional Neuroanatomy, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany
2Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Frankfurt, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Kaarjel K. Narayanasamy
Johanna V. Rahm
2Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Frankfurt, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Siddharth Tourani
3Visual Learning Lab, Heidelberg University, Heidelberg, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mike Heilemann
1Department of Functional Neuroanatomy, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany
2Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Frankfurt, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: heileman@chemie.uni-frankfurt.de
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Data/Code
  • Preview PDF
Loading

Abstract

DNA points accumulation for imaging in nanoscale topography (DNA-PAINT) is a super-resolution technique with relatively easy-to-implement multi-target imaging. However, image acquisition is slow as sufficient statistical data has to be generated from spatio-temporally isolated single emitters. Here, we trained the neural network (NN) DeepSTORM to predict fluorophore positions from high emitter density DNA-PAINT data. This achieves image acquisition in one minute. We demonstrate multi-color super-resolution imaging of structure-conserved semi-thin neuronal tissue and imaging of large samples. This improvement can be integrated into any single-molecule microscope and enables fast single-molecule super-resolution microscopy.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://doi.org/10.5281/zenodo.5576100

  • https://github.com/JohannaRahm/ImageBinner

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
Back to top
PreviousNext
Posted November 20, 2021.
Download PDF

Supplementary Material

Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Fast DNA-PAINT imaging using a deep neural network
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Fast DNA-PAINT imaging using a deep neural network
Kaarjel K. Narayanasamy, Johanna V. Rahm, Siddharth Tourani, Mike Heilemann
bioRxiv 2021.11.20.469366; doi: https://doi.org/10.1101/2021.11.20.469366
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Fast DNA-PAINT imaging using a deep neural network
Kaarjel K. Narayanasamy, Johanna V. Rahm, Siddharth Tourani, Mike Heilemann
bioRxiv 2021.11.20.469366; doi: https://doi.org/10.1101/2021.11.20.469366

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Biophysics
Subject Areas
All Articles
  • Animal Behavior and Cognition (4118)
  • Biochemistry (8826)
  • Bioengineering (6529)
  • Bioinformatics (23482)
  • Biophysics (11802)
  • Cancer Biology (9221)
  • Cell Biology (13335)
  • Clinical Trials (138)
  • Developmental Biology (7442)
  • Ecology (11422)
  • Epidemiology (2066)
  • Evolutionary Biology (15171)
  • Genetics (10449)
  • Genomics (14055)
  • Immunology (9184)
  • Microbiology (22187)
  • Molecular Biology (8821)
  • Neuroscience (47618)
  • Paleontology (350)
  • Pathology (1431)
  • Pharmacology and Toxicology (2493)
  • Physiology (3736)
  • Plant Biology (8088)
  • Scientific Communication and Education (1438)
  • Synthetic Biology (2222)
  • Systems Biology (6042)
  • Zoology (1254)