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Real-time and remote MCMC trace inspection with Beastiary

View ORCID ProfileWytamma Wirth, View ORCID ProfileSebastian Duchene
doi: https://doi.org/10.1101/2021.11.21.469478
Wytamma Wirth
Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Australia
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  • For correspondence: wytamma.wirth@unimelb.edu.au
Sebastian Duchene
Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Australia
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1 Abstract

Bayesian phylogenetic methods have gained substantial popularity in the last decade, due to their ability to incorporate independent information and fit complex models. Most Bayesian implementations rely on Markov chain Monte Carlo (MCMC), which in turn requires careful interpretation of the output to assess the statistical validity of any resulting inferences. Here we describe Beastiary, a package for real-time and remote inspection of log flies generated by MCMC analysis commonly utilised in Bayesian phylogenetic analysis. Beastiary is an easily deployed web-sever that can be used to summarise and visualise the output of many popular software packages including BEAST, BEAST2, RevBayes, and MrBayes. We describe the overall design and implementation of Beastiary and some typical use cases, with a particular focus on the capability of monitoring analyses from remote servers.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted November 23, 2021.
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Real-time and remote MCMC trace inspection with Beastiary
Wytamma Wirth, Sebastian Duchene
bioRxiv 2021.11.21.469478; doi: https://doi.org/10.1101/2021.11.21.469478
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Real-time and remote MCMC trace inspection with Beastiary
Wytamma Wirth, Sebastian Duchene
bioRxiv 2021.11.21.469478; doi: https://doi.org/10.1101/2021.11.21.469478

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