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Multiple groups of methanotrophic bacteria mediate methane oxidation in anoxic lake sediments

Guangyi Su, Jakob Zopfi, Helge Niemann, Moritz F. Lehmann
doi: https://doi.org/10.1101/2021.11.24.469942
Guangyi Su
1Department of Environmental Sciences, University of Basel, Bernoullistrasse 30, CH-4056 Basel, Switzerland
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  • For correspondence: guangyi.su@unibas.ch
Jakob Zopfi
1Department of Environmental Sciences, University of Basel, Bernoullistrasse 30, CH-4056 Basel, Switzerland
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Helge Niemann
2Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Institute for Sea Research and Utrecht University, Texel, The Netherlands
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Moritz F. Lehmann
1Department of Environmental Sciences, University of Basel, Bernoullistrasse 30, CH-4056 Basel, Switzerland
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Abstract

Freshwater lakes represent an important source of the potent greenhouse gas methane (CH4) to the atmosphere. Methane emissions are regulated to large parts by aerobic (MOx) and anaerobic (AOM) oxidation of methane that are important sinks in lakes. In contrast to marine benthic environments, our knowledge about the modes of AOM and the related methanotrophic microorganisms in anoxic lake sediments is still rudimentary. Here we demonstrate the occurrence of AOM in the anoxic sediments of Lake Sempach (Switzerland), with maximum in situ AOM rates observed within the surface sediment layers in presence of multiple groups of methanotrophic bacteria and various oxidants known to support AOM. However, substrate-amended incubations (with NO2−, NO3−, SO42–, Fe3+ and Mn4+) revealed that none of the electron acceptors previously reported to support AOM enhanced methane turnover in Lake Sempach sediments under anoxic conditions. In contrast, the addition of oxygen to the anoxic sediments resulted in an approximately tenfold increase in methane oxidation relative to the anoxic incubations. Phylogenetic and isotopic evidence indicate that both Type I and Type II aerobic methanotrophs were growing on methane under both oxic and anoxic conditions, although methane assimilation rates were an order of magnitude higher under oxic conditions. While the anaerobic electron acceptor responsible for AOM could not be identified, these findings expand our understanding of the metabolic versatility of canonically aerobic methanotrophs under anoxic conditions, with important implications for future investigations to identify methane oxidation processes. Bacterial AOM by facultative aerobic methane oxidizers might be of much larger environmental significance in reducing methane emissions than previously thought.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 05, 2021.
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Multiple groups of methanotrophic bacteria mediate methane oxidation in anoxic lake sediments
Guangyi Su, Jakob Zopfi, Helge Niemann, Moritz F. Lehmann
bioRxiv 2021.11.24.469942; doi: https://doi.org/10.1101/2021.11.24.469942
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Multiple groups of methanotrophic bacteria mediate methane oxidation in anoxic lake sediments
Guangyi Su, Jakob Zopfi, Helge Niemann, Moritz F. Lehmann
bioRxiv 2021.11.24.469942; doi: https://doi.org/10.1101/2021.11.24.469942

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