Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Joint Learning of Full-structure Noise in Hierarchical Bayesian Regression Models

View ORCID ProfileAli Hashemi, Chang Cai, View ORCID ProfileYijing Gao, View ORCID ProfileSanjay Ghosh, View ORCID ProfileKlaus-Robert Müller, View ORCID ProfileSrikantan S. Nagarajan, View ORCID ProfileStefan Haufe
doi: https://doi.org/10.1101/2021.11.28.470264
Ali Hashemi
1Uncertainty, Inverse Modeling and Machine Learning Group, Technische Universität Berlin, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ali Hashemi
  • For correspondence: hashemi@tu-berlin.de haufe@tu-berlin.de sri@ucsf.edu klaus-robert.mueller@tu-berlin.de
Chang Cai
4Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yijing Gao
4Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yijing Gao
Sanjay Ghosh
4Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sanjay Ghosh
Klaus-Robert Müller
5Machine Learning Group, Technische Universität Berlin, Germany, BIFOLD – Berlin Institute for the Foundations of Learning and Data, Berlin, Germany
6Department of Artificial Intelligence, Korea University, Seoul, South Korea
7Max Planck Institute for Informatics, Saarbrücken, Germany
Roles: Member, IEEE
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Klaus-Robert Müller
  • For correspondence: hashemi@tu-berlin.de haufe@tu-berlin.de sri@ucsf.edu klaus-robert.mueller@tu-berlin.de
Srikantan S. Nagarajan
4Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
Roles: Fellow, IEEE
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Srikantan S. Nagarajan
  • For correspondence: hashemi@tu-berlin.de haufe@tu-berlin.de sri@ucsf.edu klaus-robert.mueller@tu-berlin.de
Stefan Haufe
1Uncertainty, Inverse Modeling and Machine Learning Group, Technische Universität Berlin, Germany
2Physikalisch-Technische Bundesanstalt Braunschweig und Berlin, Germany
3Charité – Universitätsmedizin Berlin, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Stefan Haufe
  • For correspondence: hashemi@tu-berlin.de haufe@tu-berlin.de sri@ucsf.edu klaus-robert.mueller@tu-berlin.de
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

We consider the reconstruction of brain activity from electroencephalography (EEG). This inverse problem can be formulated as a linear regression with independent Gaussian scale mixture priors for both the source and noise components. Crucial factors influencing accuracy of source estimation are not only the noise level but also its correlation structure, but existing approaches have not addressed estimation of noise covariance matrices with full structure. To address this shortcoming, we develop hierarchical Bayesian (type-II maximum likelihood) models for observations with latent variables for source and noise, which are estimated jointly from data. As an extension to classical sparse Bayesian learning (SBL), where across-sensor observations are assumed to be independent and identically distributed, we consider Gaussian noise with full covariance structure. Using the majorization-maximization framework and Riemannian geometry, we derive an efficient algorithm for updating the noise covariance along the manifold of positive definite matrices. We demonstrate that our algorithm has guaranteed and fast convergence and validate it in simulations and with real MEG data. Our results demonstrate that the novel framework significantly improves upon state-of-the-art techniques in the real-world scenario where the noise is indeed non-diagonal and fully-structured. Our method has applications in many domains beyond biomagnetic inverse problems.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/AliHashemi-ai/FUN-Learning

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted November 28, 2021.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Joint Learning of Full-structure Noise in Hierarchical Bayesian Regression Models
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Joint Learning of Full-structure Noise in Hierarchical Bayesian Regression Models
Ali Hashemi, Chang Cai, Yijing Gao, Sanjay Ghosh, Klaus-Robert Müller, Srikantan S. Nagarajan, Stefan Haufe
bioRxiv 2021.11.28.470264; doi: https://doi.org/10.1101/2021.11.28.470264
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Joint Learning of Full-structure Noise in Hierarchical Bayesian Regression Models
Ali Hashemi, Chang Cai, Yijing Gao, Sanjay Ghosh, Klaus-Robert Müller, Srikantan S. Nagarajan, Stefan Haufe
bioRxiv 2021.11.28.470264; doi: https://doi.org/10.1101/2021.11.28.470264

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (3502)
  • Biochemistry (7343)
  • Bioengineering (5319)
  • Bioinformatics (20258)
  • Biophysics (10008)
  • Cancer Biology (7735)
  • Cell Biology (11293)
  • Clinical Trials (138)
  • Developmental Biology (6434)
  • Ecology (9947)
  • Epidemiology (2065)
  • Evolutionary Biology (13315)
  • Genetics (9359)
  • Genomics (12579)
  • Immunology (7696)
  • Microbiology (19008)
  • Molecular Biology (7437)
  • Neuroscience (41011)
  • Paleontology (300)
  • Pathology (1228)
  • Pharmacology and Toxicology (2134)
  • Physiology (3155)
  • Plant Biology (6858)
  • Scientific Communication and Education (1272)
  • Synthetic Biology (1895)
  • Systems Biology (5311)
  • Zoology (1087)