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A human monoclonal antibody potently pan-neutralizes SARS-CoV-2 VOCs by targeting RBD invariant sites

Xiaofei Wang, Ao Hu, Xiangyu Chen, Yixin Zhang, Fei Yu, Shuai Yue, Arong Li, Junsong Zhang, Zhiwei Pan, Yang Yang, Yao Lin, Leiqiong Gao, Jing Zhou, Jing Zhao, Fang Li, Yaling Shi, Feng Huang, Xiaofan Yang, Yi Peng, Luoyang Tu, Huan Zhang, Huanying Zheng, Jun He, Hui Zhang, Lifan Xu, Qizhao Huang, Yongqun Zhu, Kai Deng, Lilin Ye
doi: https://doi.org/10.1101/2021.11.29.470356
Xiaofei Wang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
2Department of Gastroenterology of the Second Affiliated Hospital School of Medicine, and Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
3The MOE Key Laboratory for Biosystems Homeostasis & Protection and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
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Ao Hu
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Xiangyu Chen
4School of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China
5Institute of Cancer, Xinqiao Hospital, Third Military Medical University, Chongqing 400038, China
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Yixin Zhang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Fei Yu
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
6Medical Research Center, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong, China
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Shuai Yue
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Arong Li
2Department of Gastroenterology of the Second Affiliated Hospital School of Medicine, and Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
3The MOE Key Laboratory for Biosystems Homeostasis & Protection and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
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Junsong Zhang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
6Medical Research Center, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong, China
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Zhiwei Pan
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Yang Yang
4School of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China
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Yao Lin
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Leiqiong Gao
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Jing Zhou
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Jing Zhao
8Biomedical Analysis Center, Third Military Medical University, Chongqing, China
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Fang Li
9Guangzhou Eighth People’s Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
10Guangzhou Women and Children Medical Center, Guangzhou Medical University, Guangzhou, Guangdong, China
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Yaling Shi
9Guangzhou Eighth People’s Hospital, Guangzhou Medical University, Guangzhou, Guangdong, China
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Feng Huang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
6Medical Research Center, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong, China
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Xiaofan Yang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Yi Peng
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Luoyang Tu
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Huan Zhang
11Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, Guangdong, China
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Huanying Zheng
11Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, Guangdong, China
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Jun He
12Center for Cell Lineage and Development, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, Guangdong, China
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Hui Zhang
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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Lifan Xu
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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Qizhao Huang
4School of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China
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Yongqun Zhu
2Department of Gastroenterology of the Second Affiliated Hospital School of Medicine, and Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
3The MOE Key Laboratory for Biosystems Homeostasis & Protection and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China
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  • For correspondence: zhuyongqun@zju.edu.cn dengkai6@mail.sysu.edu.cn yelilinlcmv@tmmu.edu.cn
Kai Deng
1Institute of Human Virology, Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, Guangdong, China
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  • For correspondence: zhuyongqun@zju.edu.cn dengkai6@mail.sysu.edu.cn yelilinlcmv@tmmu.edu.cn
Lilin Ye
7Institute of Immunology, PLA, Third Military Medical University, Chongqing, China
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  • For correspondence: zhuyongqun@zju.edu.cn dengkai6@mail.sysu.edu.cn yelilinlcmv@tmmu.edu.cn
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Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a global pandemic of novel corona virus disease (COVID-19). The neutralizing monoclonal antibodies (mAbs) targeting the receptor binding domain (RBD) of SARS-CoV-2 are among the most promising strategies to prevent and treat COVID-19. However, SARS-CoV-2 variants of concern (VOCs) profoundly reduced the efficacies of most of mAbs and vaccines approved for clinical use. Herein, we demonstrated mAb 35B5 efficiently neutralizes both wild-type (WT) SARS-CoV-2 and VOCs, including B.1.617.2 (delta) variant, in vitro and in vivo. Cryo-electron microscopy (cryo-EM) revealed that 35B5 neutralizes SARS-CoV-2 by targeting a unique epitope that avoids the prevailing mutation sites on RBD identified in circulating VOCs, providing the molecular basis for its pan-neutralizing efficacy. The 35B5-binding epitope could also be exploited for the rational design of a universal SARS-CoV-2 vaccine.

Competing Interest Statement

The pending patents of 35B5 and 32C7 have been licensed.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 07, 2021.
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A human monoclonal antibody potently pan-neutralizes SARS-CoV-2 VOCs by targeting RBD invariant sites
Xiaofei Wang, Ao Hu, Xiangyu Chen, Yixin Zhang, Fei Yu, Shuai Yue, Arong Li, Junsong Zhang, Zhiwei Pan, Yang Yang, Yao Lin, Leiqiong Gao, Jing Zhou, Jing Zhao, Fang Li, Yaling Shi, Feng Huang, Xiaofan Yang, Yi Peng, Luoyang Tu, Huan Zhang, Huanying Zheng, Jun He, Hui Zhang, Lifan Xu, Qizhao Huang, Yongqun Zhu, Kai Deng, Lilin Ye
bioRxiv 2021.11.29.470356; doi: https://doi.org/10.1101/2021.11.29.470356
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A human monoclonal antibody potently pan-neutralizes SARS-CoV-2 VOCs by targeting RBD invariant sites
Xiaofei Wang, Ao Hu, Xiangyu Chen, Yixin Zhang, Fei Yu, Shuai Yue, Arong Li, Junsong Zhang, Zhiwei Pan, Yang Yang, Yao Lin, Leiqiong Gao, Jing Zhou, Jing Zhao, Fang Li, Yaling Shi, Feng Huang, Xiaofan Yang, Yi Peng, Luoyang Tu, Huan Zhang, Huanying Zheng, Jun He, Hui Zhang, Lifan Xu, Qizhao Huang, Yongqun Zhu, Kai Deng, Lilin Ye
bioRxiv 2021.11.29.470356; doi: https://doi.org/10.1101/2021.11.29.470356

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