Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user’s perspective

Alejandro Fernández-Vega; Federica Farabegoli; María M. Alonso-Martínez; Ignacio Ortea

doi:10.1101/2021.11.29.470373

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Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user’s perspective

Alejandro Fernández-Vega, Federica Farabegoli, María M. Alonso-Martínez, View ORCID ProfileIgnacio Ortea

doi: https://doi.org/10.1101/2021.11.29.470373

Alejandro Fernández-Vega

1Clinical Proteomics Group, Instituto de Investigación e Innovación Biomédica de Cádiz (INiBICA), Cádiz 11009, Spain

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Federica Farabegoli

2ANFACO-CECOPESCA, Vigo 36310, Spain

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María M. Alonso-Martínez

2ANFACO-CECOPESCA, Vigo 36310, Spain

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Ignacio Ortea

1Clinical Proteomics Group, Instituto de Investigación e Innovación Biomédica de Cádiz (INiBICA), Cádiz 11009, Spain

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ORCID record for Ignacio Ortea
For correspondence: nacho.ortea@inibica.es

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Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user’s perspective

Alejandro Fernández-Vega, Federica Farabegoli, María M. Alonso-Martínez, Ignacio Ortea

bioRxiv 2021.11.29.470373; doi: https://doi.org/10.1101/2021.11.29.470373

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Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user’s perspective

Alejandro Fernández-Vega, Federica Farabegoli, María M. Alonso-Martínez, Ignacio Ortea

bioRxiv 2021.11.29.470373; doi: https://doi.org/10.1101/2021.11.29.470373

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