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Pontin/Reptin-associated complexes differentially impact plant development and viral pathology

View ORCID ProfileSnigdha Chatterjee, Min Xu, View ORCID ProfileElena A. Shemyakina, View ORCID ProfileJacob O. Brunkard
doi: https://doi.org/10.1101/2021.11.29.470430
Snigdha Chatterjee
1Laboratory of Genetics, University of Wisconsin – Madison, Madison, WI 53706, USA
2Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
3Plant Gene Expression Center, USDA Agricultural Research Service, Albany, CA 94710, USA
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  • ORCID record for Snigdha Chatterjee
Min Xu
4Department of Biology, Northwest University, 710069 Xi’an, China
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Elena A. Shemyakina
2Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
3Plant Gene Expression Center, USDA Agricultural Research Service, Albany, CA 94710, USA
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Jacob O. Brunkard
1Laboratory of Genetics, University of Wisconsin – Madison, Madison, WI 53706, USA
2Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
3Plant Gene Expression Center, USDA Agricultural Research Service, Albany, CA 94710, USA
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  • For correspondence: brunkard@wisc.edu
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Abstract

Pontin and Reptin are essential eukaryotic AAA+ ATPases that work together in several multiprotein complexes, contributing to chromatin remodeling and TARGET OF RAPAMCYIN (TOR) kinase complex assembly, among other functions. Null alleles of pontin or reptin are gametophyte lethal in plants, which has hindered studies of their crucial roles in plant biology. Here, we used virus-induced gene silencing (VIGS) to interrogate the functions of Pontin and Reptin in plant growth and physiology, focusing on Nicotiana benthamiana, a model species for the agriculturally significant Solanaceae family. Silencing either Pontin or Reptin caused pleiotropic developmental and physiological reprogramming, including aberrant leaf shape, reduced apical growth, delayed flowering, increased branching, chlorosis, and decreased spread of the RNA viruses Tobacco mosaic virus (TMV) and Potato virus X (PVX). To dissect these pleiotropic phenotypes, we took a comparative approach and silenced expression of key genes that encode subunits of each of the major Pontin/Reptin-associated chromatin remodeling or TOR complexes (INO80, SWR-C/PIE1, TIP60, TOR, and TELO2). We found that many of the pontin/reptin phenotypes could be attributed specifically to disruption of one of these complexes, with tip60 and tor knockdown plants each phenocopying a large subset of pontin/reptin phenotypes. We conclude that Pontin/Reptin complexes are crucial for proper plant development, physiology, and stress responses, highlighting the multifaceted roles these conserved enzymes have evolved in eukaryotic cells.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 30, 2021.
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Pontin/Reptin-associated complexes differentially impact plant development and viral pathology
Snigdha Chatterjee, Min Xu, Elena A. Shemyakina, Jacob O. Brunkard
bioRxiv 2021.11.29.470430; doi: https://doi.org/10.1101/2021.11.29.470430
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Pontin/Reptin-associated complexes differentially impact plant development and viral pathology
Snigdha Chatterjee, Min Xu, Elena A. Shemyakina, Jacob O. Brunkard
bioRxiv 2021.11.29.470430; doi: https://doi.org/10.1101/2021.11.29.470430

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