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Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases

Ved Mehta, Basavraj Khanppnavar, Dina Schuster, Ilayda Kantarci, Irene Vercellino, Angela Kosturanova, Tarun Iype, Sasa Stefanic, Paola Picotti, View ORCID ProfileVolodymyr M. Korkhov
doi: https://doi.org/10.1101/2021.12.01.470738
Ved Mehta
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
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Basavraj Khanppnavar
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
2Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland
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Dina Schuster
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
2Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland
4Institute of Molecular Systems Biology, ETH Zurich, Switzerland
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Ilayda Kantarci
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
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Irene Vercellino
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
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Angela Kosturanova
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
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Tarun Iype
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
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Sasa Stefanic
3Institute of Parasitology, University of Zurich, Switzerland
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Paola Picotti
4Institute of Molecular Systems Biology, ETH Zurich, Switzerland
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Volodymyr M. Korkhov
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland
2Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland
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  • ORCID record for Volodymyr M. Korkhov
  • For correspondence: volodymyr.korkhov@psi.ch
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Abstract

Mycobacterium tuberculosis adenylyl cyclase (AC) Rv1625c / Cya is an evolutionary ancestor of the mammalian membrane ACs and a model system for studies of their structure and function. Although the vital role of ACs in cellular signaling is well established, the function of their transmembrane (TM) regions remains unknown. Here we describe the cryo-EM structure of Cya bound to a stabilizing nanobody at 3.6 Å resolution. The TM helices 1-5 form a structurally conserved domain that facilitates the assembly of the helical and catalytic domains. The TM region contains discrete pockets accessible from the extracellular and cytosolic side of the membrane. Neutralization of the negatively charged extracellular pocket Ex1 destabilizes the cytosolic helical domain and reduces the catalytic activity of the enzyme. The TM domain acts as a functional component of Cya, guiding the assembly of the catalytic domain and providing the means for direct regulation of catalytic activity in response to extracellular ligands.

One-Sentence Summary Structure of M. tuberculosis membrane adenylyl cyclase Cya

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Minor changes have been introduced to the text, including: an updated Data and materials availability statement indicating the PDB and EMDB accession codes, a corrected X-axis in Figure 5F and updated Table S1 and S2, Figures 1, S3, S6, corresponding to the latest refined and deposited models of Cya-Nb4 complex.

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Posted February 22, 2022.
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Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases
Ved Mehta, Basavraj Khanppnavar, Dina Schuster, Ilayda Kantarci, Irene Vercellino, Angela Kosturanova, Tarun Iype, Sasa Stefanic, Paola Picotti, Volodymyr M. Korkhov
bioRxiv 2021.12.01.470738; doi: https://doi.org/10.1101/2021.12.01.470738
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Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases
Ved Mehta, Basavraj Khanppnavar, Dina Schuster, Ilayda Kantarci, Irene Vercellino, Angela Kosturanova, Tarun Iype, Sasa Stefanic, Paola Picotti, Volodymyr M. Korkhov
bioRxiv 2021.12.01.470738; doi: https://doi.org/10.1101/2021.12.01.470738

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