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Deciphering the potential niche of novel black yeast fungal isolates in a biological soil crust based on genomes, phenotyping, and melanin regulation

View ORCID ProfileErin C. Carr, Quin Barton, Sarah Grambo, Mitchell Sullivan, Cecile M. Renfro, Alan Kuo, Jasmyn Pangilinan, Anna Lipzen, Keykhosrow Keymanesh, Emily Savage, Kerrie Barry, Igor V. Grigoriev, View ORCID ProfileWayne R. Riekhof, Steven D. Harris
doi: https://doi.org/10.1101/2021.12.03.471027
Erin C. Carr
1University of Nebraska-Lincoln, School of Biological Sciences, Lincoln, Nebraska 68588
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  • For correspondence: erin.carr1216@gmail.com
Quin Barton
2University of Nebraska-Lincoln, Department of Biochemistry, Lincoln, Nebraska 68588
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Sarah Grambo
3Iowa State University, Roy J. Carver Department of Biochemistry, Biophysics, and Molecular Biology, Ames, Iowa 50011
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Mitchell Sullivan
1University of Nebraska-Lincoln, School of Biological Sciences, Lincoln, Nebraska 68588
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Cecile M. Renfro
4University of Nebraska-Lincoln, Department of Agronomy and Horticulture, Lincoln, Nebraska 68588
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Alan Kuo
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Jasmyn Pangilinan
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Anna Lipzen
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Keykhosrow Keymanesh
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Emily Savage
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Kerrie Barry
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
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Igor V. Grigoriev
5US Department of Energy Joint Genome Institute Lawrence Berkley National Laboratory, Berkley California 94720
6Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, California 94720
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Wayne R. Riekhof
1University of Nebraska-Lincoln, School of Biological Sciences, Lincoln, Nebraska 68588
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Steven D. Harris
7Iowa State University, Department of Plant Pathology and Microbiology, Ames, Iowa 50011
8Iowa State University, Department of Entomology Ames, Iowa 50011
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Abstract

Black yeasts are polyextremotolerant fungi that contain high amounts of melanin in their cell wall and maintain a primarily yeast form. These fungi grow in xeric, nutrient deplete environments which implies that they require highly flexible metabolisms and the ability to form lichen-like mutualisms with nearby algae and bacteria. However, the exact ecological niche and interactions between these fungi and their surrounding community is not well understood. We have isolated two novel black yeast fungi of the genus Exophiala: JF 03-3F “Goopy” E. viscosium and JF 03-4F “Slimy” E. limosus, which are from dryland biological soil crusts. A combination of whole genome sequencing and various phenotyping experiments have been performed on these isolates to determine their fundamental niches within the biological soil crust consortium. Our results reveal that these Exophiala spp. are capable of utilizing a wide variety of carbon and nitrogen sources potentially from symbiotic microbes, they can withstand many abiotic stresses, and can potentially provide UV resistance to the crust community in the form of secreted melanin. Besides the identification of two novel species within the genus Exophiala, our study also provides new insight into the production and regulation of melanin in extremotolerant fungi.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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Posted December 04, 2021.
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Deciphering the potential niche of novel black yeast fungal isolates in a biological soil crust based on genomes, phenotyping, and melanin regulation
Erin C. Carr, Quin Barton, Sarah Grambo, Mitchell Sullivan, Cecile M. Renfro, Alan Kuo, Jasmyn Pangilinan, Anna Lipzen, Keykhosrow Keymanesh, Emily Savage, Kerrie Barry, Igor V. Grigoriev, Wayne R. Riekhof, Steven D. Harris
bioRxiv 2021.12.03.471027; doi: https://doi.org/10.1101/2021.12.03.471027
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Deciphering the potential niche of novel black yeast fungal isolates in a biological soil crust based on genomes, phenotyping, and melanin regulation
Erin C. Carr, Quin Barton, Sarah Grambo, Mitchell Sullivan, Cecile M. Renfro, Alan Kuo, Jasmyn Pangilinan, Anna Lipzen, Keykhosrow Keymanesh, Emily Savage, Kerrie Barry, Igor V. Grigoriev, Wayne R. Riekhof, Steven D. Harris
bioRxiv 2021.12.03.471027; doi: https://doi.org/10.1101/2021.12.03.471027

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