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Ecophysiological genomics identifies a pleiotropic locus mediating drought tolerance in sorghum

Fanna Maina, Abdou Harou, Falalou Hamidou, View ORCID ProfileGeoffrey P. Morris
doi: https://doi.org/10.1101/2021.12.03.471162
Fanna Maina
1Department of Agronomy, Kansas State University, Manhattan, KS, USA 66506
2Institut National de la Recherche Agronomique du Niger, Niamey, Niger
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Abdou Harou
3International Crops Research Institute for the Semi-Arid Tropics – Sahelian Center, Niamey, Niger
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Falalou Hamidou
3International Crops Research Institute for the Semi-Arid Tropics – Sahelian Center, Niamey, Niger
4Department of Biology, Faculty of Sciences and Technology, Abdou Moumouni University, Niamey, Niger
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Geoffrey P. Morris
5Department of Soil & Crop Science, Colorado State University, Fort Collins, CO, USA 80523
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  • ORCID record for Geoffrey P. Morris
  • For correspondence: Geoff.Morris@colostate.edu
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ABSTRACT

Drought is a key constraint on plant productivity and threat to food security. Sorghum (Sorghum bicolor L. Moench), a global staple food and forage crop, is among the most drought-adapted cereal crops, but its adaptation is not yet well understood. This study aims to better understand the genetic basis of preflowering drought in sorghum and identify loci underlying variation in water use and yield components under drought. A panel of 219 diverse sorghum from West Africa was phenotyped for yield components and water use in an outdoor large-tube lysimeter system under well-watered (WW) versus a preflowering drought water-stressed (WS) treatment. The experimental system was validated based on characteristic drought response in international drought tolerance check genotypes and genome-wide association studies (GWAS) that mapped the major height locus at QHT7.1 and Dw3. GWAS further identified marker trait associations (MTAs) for drought-related traits (plant height, flowering time, forage biomass, grain weight, water use) that each explained 7–70% of phenotypic variance. Most MTAs for drought-related traits correspond to loci not previously reported, but some MTA for forage biomass and grain weight under WS co-localized with staygreen post-flowering drought tolerance loci (Stg3a and Stg4). A globally common allele at S7_50055849 is associated with several yield components under drought, suggesting that it tags a major pleiotropic variant controlling assimilate partitioning to grain versus vegetative biomass. The GWAS findings revealed oligogenic variants for drought tolerance in sorghum landraces which could be used as trait predictive markers for improved drought adaptation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted December 04, 2021.
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Ecophysiological genomics identifies a pleiotropic locus mediating drought tolerance in sorghum
Fanna Maina, Abdou Harou, Falalou Hamidou, Geoffrey P. Morris
bioRxiv 2021.12.03.471162; doi: https://doi.org/10.1101/2021.12.03.471162
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Ecophysiological genomics identifies a pleiotropic locus mediating drought tolerance in sorghum
Fanna Maina, Abdou Harou, Falalou Hamidou, Geoffrey P. Morris
bioRxiv 2021.12.03.471162; doi: https://doi.org/10.1101/2021.12.03.471162

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