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Duplication of NRAMP3 gene in poplars generated two homologous transporters with distinct functions

View ORCID ProfileMathieu Pottier, Van Anh Le Thi, Catherine Primard-Brisset, Jessica Marion, View ORCID ProfileMichele Bianchi, Cindy Victor, View ORCID ProfileAnnabelle Déjardin, View ORCID ProfileGilles Pilate, View ORCID ProfileSébastien Thomine
doi: https://doi.org/10.1101/2021.12.04.471152
Mathieu Pottier
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
3Institute for Molecular Physiology, Heinrich-Heine-University Düsseldorf, Düsseldorf 40225, Germany
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Van Anh Le Thi
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
4Graduate University of Science and Technology (GUST), Vietnam Academy of Science and Technology (VAST), 18 Hoang Quoc Viet, Cau Giay, Hanoi 10000, Vietnam
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Catherine Primard-Brisset
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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Jessica Marion
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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Michele Bianchi
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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Cindy Victor
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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Annabelle Déjardin
2INRAE, ONF, BioForA, Orléans, France
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Gilles Pilate
2INRAE, ONF, BioForA, Orléans, France
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Sébastien Thomine
1Institut de Biologie Intégrative de la Cellule, CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
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  • For correspondence: Sebastien.thomine@i2bc.paris-saclay.fr
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ABSTRACT

Transition metals are essential for a wealth of metabolic reactions, but their concentrations need to be tightly controlled across cells and cell compartments, as metal excess or imbalance has deleterious effects. Metal homeostasis is achieved by a combination of metal transport across membranes and metal binding to a variety of molecules. Gene duplication is a key process in evolution, as emergence of advantageous mutations on one of the copies can confer a new function. Here, we report that the poplar genome contains two paralogues encoding NRAMP3 metal transporters localized in tandem. All Populus species analyzed had two copies of NRAMP3, whereas only one could be identified in Salix species indicating that duplication occurred when the two genera separated. Both copies are under purifying selection and encode functional transporters, as shown by expression in the yeast heterologous expression system. However, genetic complementation revealed that only one of the paralogues has retained the original function in release of metals stored in the vacuole previously characterized in A. thaliana. Confocal imaging showed that the other copy has acquired a distinct localization to the Trans Golgi Network (TGN). Expression in poplar indicated that the copy of NRAMP3 localized on the TGN has a novel function in the control of cell-to-cell transport of manganese. This work provides a clear case of neo-functionalization through change in the subcellular localization of a metal transporter as well as evidence for the involvement of the secretory pathway in cell-to-cell transport of manganese.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 04, 2021.
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Duplication of NRAMP3 gene in poplars generated two homologous transporters with distinct functions
Mathieu Pottier, Van Anh Le Thi, Catherine Primard-Brisset, Jessica Marion, Michele Bianchi, Cindy Victor, Annabelle Déjardin, Gilles Pilate, Sébastien Thomine
bioRxiv 2021.12.04.471152; doi: https://doi.org/10.1101/2021.12.04.471152
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Duplication of NRAMP3 gene in poplars generated two homologous transporters with distinct functions
Mathieu Pottier, Van Anh Le Thi, Catherine Primard-Brisset, Jessica Marion, Michele Bianchi, Cindy Victor, Annabelle Déjardin, Gilles Pilate, Sébastien Thomine
bioRxiv 2021.12.04.471152; doi: https://doi.org/10.1101/2021.12.04.471152

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