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The veterinary anti-parasitic selamectin is a novel inhibitor of the mycobacterial DprE1 enzyme

José Manuel Ezquerra-Aznárez, Giulia Degiacomi, Henrich Gašparovič, Giovanni Stelitano, José Camilla Sammartino, Jana Korduláková, Paolo Governa, Fabrizio Manetti, Maria Rosalia Pasca, Laurent Roberto Chiarelli, Santiago Ramón-García
doi: https://doi.org/10.1101/2021.12.04.471217
José Manuel Ezquerra-Aznárez
1Department of Microbiology, Faculty of Medicine, University of Zaragoza, Spain
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Giulia Degiacomi
2Department of Biology and Biotechnology “Lazzaro Spallanzani”, University of Pavia, Italy
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Henrich Gašparovič
3Department of Biochemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Slovakia
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Giovanni Stelitano
2Department of Biology and Biotechnology “Lazzaro Spallanzani”, University of Pavia, Italy
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José Camilla Sammartino
2Department of Biology and Biotechnology “Lazzaro Spallanzani”, University of Pavia, Italy
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Jana Korduláková
3Department of Biochemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Slovakia
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Paolo Governa
4Department of Biotechnology, Chemistry and Pharmacy, University of Siena, Italy
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Fabrizio Manetti
4Department of Biotechnology, Chemistry and Pharmacy, University of Siena, Italy
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Maria Rosalia Pasca
2Department of Biology and Biotechnology “Lazzaro Spallanzani”, University of Pavia, Italy
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Laurent Roberto Chiarelli
2Department of Biology and Biotechnology “Lazzaro Spallanzani”, University of Pavia, Italy
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  • For correspondence: santiramon@unizar.es laurent.chiarelli@unipv.it
Santiago Ramón-García
1Department of Microbiology, Faculty of Medicine, University of Zaragoza, Spain
5Research & Development Agency of Aragon (ARAID) Foundation, Spain
6CIBER Enfermedades Respiratorias (CIBERES), Instituto de Salud Carlos III, Spain
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  • For correspondence: santiramon@unizar.es laurent.chiarelli@unipv.it
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Abstract

Avermectins are macrocyclic lactones with anthelmintic activity. Recently, they were found to be effective against Mycobacterium tuberculosis, which accounts for one third of the worldwide deaths from antimicrobial resistance. However, their anti-mycobacterial mode of action remains to be elucidated. The activity of selamectin was determined against a panel of M. tuberculosis mutants. Two strains carrying mutations in DprE1, the decaprenylphosphoryl-β-D-ribose oxidase involved in the synthesis of mycobacterial arabinogalactan, were more susceptible to selamectin. Biochemical assays against the Mycobacterium smegmatis DprE1 protein confirmed this finding, and docking studies predicted a binding site in a loop that included Leu275. Sequence alignment revealed variants in this position among mycobacterial species, with the size and hydrophobicity of the residue correlating with their MIC values; M. smegmatis DprE1 variants carrying these point mutations validated the docking predictions. However, the correlation was not confirmed when M. smegmatis mutant strains were constructed and MIC phenotypic assays performed. Likewise, metabolic labeling of selamectin-treated M. smegmatis and M. tuberculosis cells with 14C-labeled acetate did not reveal the expected lipid profile associated with DprE1 inhibition. Together, our results confirm the in vitro interactions of selamectin and DprE1 but suggest that selamectin could be a multi-target anti-mycobacterial compound.

Competing Interest Statement

The authors have declared no competing interest.

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Posted December 04, 2021.
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The veterinary anti-parasitic selamectin is a novel inhibitor of the mycobacterial DprE1 enzyme
José Manuel Ezquerra-Aznárez, Giulia Degiacomi, Henrich Gašparovič, Giovanni Stelitano, José Camilla Sammartino, Jana Korduláková, Paolo Governa, Fabrizio Manetti, Maria Rosalia Pasca, Laurent Roberto Chiarelli, Santiago Ramón-García
bioRxiv 2021.12.04.471217; doi: https://doi.org/10.1101/2021.12.04.471217
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The veterinary anti-parasitic selamectin is a novel inhibitor of the mycobacterial DprE1 enzyme
José Manuel Ezquerra-Aznárez, Giulia Degiacomi, Henrich Gašparovič, Giovanni Stelitano, José Camilla Sammartino, Jana Korduláková, Paolo Governa, Fabrizio Manetti, Maria Rosalia Pasca, Laurent Roberto Chiarelli, Santiago Ramón-García
bioRxiv 2021.12.04.471217; doi: https://doi.org/10.1101/2021.12.04.471217

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