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Characterization of individual HIV-1 budding event using ultra-fast atomic force microscopy reveals a multiplexed role for VPS4

Shimon Harel, Yarin Altaras, Dikla Nachmias, Noa Rotem-Dai, Inbar Segal, View ORCID ProfileNatalie Elia, View ORCID ProfileItay Rousso
doi: https://doi.org/10.1101/2021.12.12.472262
Shimon Harel
1Department of Physiology and Cell Biology; Ben-Gurion University of the Negev, Beer Sheva, Israel
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Yarin Altaras
2Department of Life Sciences and NIBN, Ben-Gurion University of the Negev, Beer Sheva, Israel
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Dikla Nachmias
2Department of Life Sciences and NIBN, Ben-Gurion University of the Negev, Beer Sheva, Israel
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Noa Rotem-Dai
1Department of Physiology and Cell Biology; Ben-Gurion University of the Negev, Beer Sheva, Israel
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Inbar Segal
2Department of Life Sciences and NIBN, Ben-Gurion University of the Negev, Beer Sheva, Israel
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Natalie Elia
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  • For correspondence: roussoi@bgu.ac.il
Itay Rousso
1Department of Physiology and Cell Biology; Ben-Gurion University of the Negev, Beer Sheva, Israel
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  • For correspondence: roussoi@bgu.ac.il
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Abstract

The assembly and budding of newly formed human immunodeficiency virus-1 (HIV-1) particles occur at the plasma membrane of infected cells. Whereas the molecular basis for viral budding has been studied extensively, investigation of its spatiotemporal characteristics has been limited by the small dimensions (< 100 nm) of HIV particles and the fast kinetics of the process (a few minutes from bud formation to virion release). Here we applied ultra-fast atomic force microscopy to achieve real-time visualization of individual HIV-1 budding events from wildtype (WT) cell lines as well as from mutated lines lacking vacuolar protein sorting-4 (VPS4) or visceral adipose tissue-1 protein (VTA1). Using single-particle analysis, we show that HIV-1 bud formation follows two kinetic pathways (fast and slow) with each composed of three distinct phases (growth, stationary, decay). Notably, approximately 30% of events did not result in viral release and were characterized by the formation of short (rather than tall) particles that slowly decayed back into the cell membrane. These non-productive events became more abundant in VPS4 knockout cell lines. Strikingly, the absence of VPS4B, rather than VPS4A, increased the production of short viral particles, suggesting a role for VPS4B in earlier stages of HIV-1 budding than traditionally thought.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 12, 2021.
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Characterization of individual HIV-1 budding event using ultra-fast atomic force microscopy reveals a multiplexed role for VPS4
Shimon Harel, Yarin Altaras, Dikla Nachmias, Noa Rotem-Dai, Inbar Segal, Natalie Elia, Itay Rousso
bioRxiv 2021.12.12.472262; doi: https://doi.org/10.1101/2021.12.12.472262
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Characterization of individual HIV-1 budding event using ultra-fast atomic force microscopy reveals a multiplexed role for VPS4
Shimon Harel, Yarin Altaras, Dikla Nachmias, Noa Rotem-Dai, Inbar Segal, Natalie Elia, Itay Rousso
bioRxiv 2021.12.12.472262; doi: https://doi.org/10.1101/2021.12.12.472262

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