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Monosomy X in isogenic human iPSC-derived trophoblast model impacts expression modules preserved in human placenta

View ORCID ProfileDarcy T. Ahern, View ORCID ProfilePrakhar Bansal, View ORCID ProfileIsaac Faustino, View ORCID ProfileYuvabharath Kondaveeti, Heather R. Glatt-Deeley, Erin C. Banda, View ORCID ProfileStefan F. Pinter
doi: https://doi.org/10.1101/2021.12.13.472325
Darcy T. Ahern
1Graduate Program in Genetics and Developmental Biology, UCONN Health, University of Connecticut, Farmington, CT, United States
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
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Prakhar Bansal
1Graduate Program in Genetics and Developmental Biology, UCONN Health, University of Connecticut, Farmington, CT, United States
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
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Isaac Faustino
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
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Yuvabharath Kondaveeti
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
3Enzerna Biosciences, Morrisville, NC
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Heather R. Glatt-Deeley
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
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Erin C. Banda
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
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Stefan F. Pinter
1Graduate Program in Genetics and Developmental Biology, UCONN Health, University of Connecticut, Farmington, CT, United States
2Department of Genetics and Genome Sciences, UCONN Health, University of Connecticut, Farmington, CT, United States
4Institute for Systems Genomics, University of Connecticut, Farmington, CT, United States
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  • For correspondence: spinter@uchc.edu
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SUMMARY/ABSTRACT

Mammalian sex chromosomes encode homologous X/Y gene pairs that were retained on the male Y and escape X chromosome inactivation (XCI) in females. Inferred to reflect X/Y-pair dosage sensitivity, monosomy X is a leading cause of miscarriage in humans with near full penetrance. This phenotype is shared with many other mammals but not the mouse, which offers sophisticated genetic tools to generate sex chromosomal aneuploidy but also tolerates its developmental impact. To address this critical gap, we generated X-monosomic human induced pluripotent stem cells (hiPSCs) alongside otherwise isogenic euploid controls from male and female mosaic samples. Phased genomic variants of these hiPSC panels enable systematic investigation of X/Y dosage-sensitive features using in vitro models of human development.

Here, we demonstrate the utility of these validated hiPSC lines to test how X/Y-linked gene dosage impacts a widely-used model for the human syncytiotrophoblast. While these isogenic panels trigger a GATA2/3 and TFAP2A/C -driven trophoblast gene circuit irrespective of karyotype, differential expression implicates monosomy X in altered levels of placental genes, and in secretion of placental growth factor (PlGF) and human chorionic gonadotropin (hCG). Remarkably, weighted gene co-expression network modules that significantly reflect these changes are also preserved in first-trimester chorionic villi and term placenta. Our results suggest monosomy X may skew trophoblast cell type composition, and that the pseudoautosomal region likely plays a key role in these changes, which may facilitate prioritization of haploinsufficient drivers of 45,X extra-embryonic phenotypes.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 14, 2021.
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Monosomy X in isogenic human iPSC-derived trophoblast model impacts expression modules preserved in human placenta
Darcy T. Ahern, Prakhar Bansal, Isaac Faustino, Yuvabharath Kondaveeti, Heather R. Glatt-Deeley, Erin C. Banda, Stefan F. Pinter
bioRxiv 2021.12.13.472325; doi: https://doi.org/10.1101/2021.12.13.472325
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Monosomy X in isogenic human iPSC-derived trophoblast model impacts expression modules preserved in human placenta
Darcy T. Ahern, Prakhar Bansal, Isaac Faustino, Yuvabharath Kondaveeti, Heather R. Glatt-Deeley, Erin C. Banda, Stefan F. Pinter
bioRxiv 2021.12.13.472325; doi: https://doi.org/10.1101/2021.12.13.472325

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