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Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2

View ORCID ProfileJamshed Khan, View ORCID ProfileMarek Kokot, View ORCID ProfileSebastian Deorowicz, View ORCID ProfileRob Patro
doi: https://doi.org/10.1101/2021.12.14.472718
Jamshed Khan
1Department of Computer Science, University of Maryland, College Park, Maryland, USA
2Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
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  • ORCID record for Jamshed Khan
Marek Kokot
3Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, Poland
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Sebastian Deorowicz
3Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, Poland
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Rob Patro
1Department of Computer Science, University of Maryland, College Park, Maryland, USA
2Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
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  • For correspondence: rob@cs.umd.edu
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Posted December 16, 2021.
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Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
Jamshed Khan, Marek Kokot, Sebastian Deorowicz, Rob Patro
bioRxiv 2021.12.14.472718; doi: https://doi.org/10.1101/2021.12.14.472718
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Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
Jamshed Khan, Marek Kokot, Sebastian Deorowicz, Rob Patro
bioRxiv 2021.12.14.472718; doi: https://doi.org/10.1101/2021.12.14.472718

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