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CD4 T cells are rapidly depleted from tuberculosis granulomas following acute SIV co-infection

Taylor W. Foreman, Christine E. Nelson, Keith D. Kauffman, Nickiana E. Lora, Caian L. Vinhaes, Danielle E. Dorosky, Shunsuke Sakai, Felipe Gomez, Joel D. Fleegle, Melanie Parham, Shehan R. Perera, View ORCID ProfileCecilia S. Lindestam Arlehamn, Alessandro Sette, Tuberculosis Imaging Program, Jason M. Brenchley, Artur T.L. Queiroz, Bruno B. Andrade, Juraj Kabat, Laura E. Via, Daniel L. Barber
doi: https://doi.org/10.1101/2021.12.17.473203
Taylor W. Foreman
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Christine E. Nelson
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Keith D. Kauffman
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Nickiana E. Lora
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Caian L. Vinhaes
2Multinational Organization Network Sponsoring Translational and Epidemiological Research (MONSTER) Initiative, Instituto Gonçalo Moniz, Fundção Oswaldo Cruz, Salvador, Brazil
3Bahiana School of Medicine and Public Health (EBMSP), Salvador, Brazil
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Danielle E. Dorosky
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Shunsuke Sakai
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Felipe Gomez
4Division of Intramural Research, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Joel D. Fleegle
4Division of Intramural Research, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Melanie Parham
5Axle Informatics, National Center for Advancing Translational Sciences, Bethesda, MD, USA
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Shehan R. Perera
6Department of Electrical and Computer Engineering, The Ohio State University, Columbus, OH, USA
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Cecilia S. Lindestam Arlehamn
7Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, USA
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  • ORCID record for Cecilia S. Lindestam Arlehamn
Alessandro Sette
7Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, USA
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4Division of Intramural Research, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
Jason M. Brenchley
8Barrier Immunity Section, Laboratory of Viral Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Artur T.L. Queiroz
2Multinational Organization Network Sponsoring Translational and Epidemiological Research (MONSTER) Initiative, Instituto Gonçalo Moniz, Fundção Oswaldo Cruz, Salvador, Brazil
9Data and Knowledge Integration Center for Health (CIDACS), Instituto Gonçalo Moniz, Salvador, Bahia, Brazil
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Bruno B. Andrade
2Multinational Organization Network Sponsoring Translational and Epidemiological Research (MONSTER) Initiative, Instituto Gonçalo Moniz, Fundção Oswaldo Cruz, Salvador, Brazil
3Bahiana School of Medicine and Public Health (EBMSP), Salvador, Brazil
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Juraj Kabat
10Biological Imaging Section, Research Technologies Branch, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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Laura E. Via
4Division of Intramural Research, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
11Tuberculosis Research Section, Laboratory of Clinical Immunology and Microbiology, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
12Institute of Infectious Disease & Molecular Medicine and Division of Immunology, Department of Pathology, University of Cape Town, Observatory, South Africa
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Daniel L. Barber
1T lymphocyte Biology Section, Laboratory of Parasitic Diseases, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Bethesda, MD, USA
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  • For correspondence: barberd@niaid.nih.gov
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ABSTRACT

The HIV-mediated decline in circulating CD4 T cells correlates with increased risk of active tuberculosis (TB)1–4. However, HIV/Mycobacterium tuberculosis (Mtb) co-infected individuals also have an increased incidence of TB prior to loss of CD4 T cells in blood3,5, raising the possibility that HIV co-infection leads to disruption of CD4 T cell responses at the site of lung infection before they are observed systemically. Here we used a rhesus macaque model of SIV/Mtb co-infection to study the early effects of acute SIV infection on CD4 T cells in pulmonary Mtb granulomas. Two weeks after SIV co-infection CD4 T cells were dramatically depleted from granulomas, before significant bacterial outgrowth, disease reactivation as measured by PET-CT imaging, or CD4 T cell loss in blood, airways, and lymph nodes. Mtb-specific CD4 T cells, CCR5-expressing, in granulomas were preferentially depleted by SIV infection. Moreover, CD4 T cells were preferentially depleted from the granuloma core and lymphocyte cuff relative to B cell-rich regions, and live imaging of granuloma explants showed that SIV co-infection reduced T cell motility. Thus, Mtb-specific CD4 T cells in pulmonary granulomas may be decimated before many patients even experience the first symptoms of acute HIV infection.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵‡ Note: The members of the NIAID/DIR Tuberculosis Imaging Program can be found at the end of the Acknowledgments

  • Minor copy edits, no content changes.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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Posted December 19, 2021.
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CD4 T cells are rapidly depleted from tuberculosis granulomas following acute SIV co-infection
Taylor W. Foreman, Christine E. Nelson, Keith D. Kauffman, Nickiana E. Lora, Caian L. Vinhaes, Danielle E. Dorosky, Shunsuke Sakai, Felipe Gomez, Joel D. Fleegle, Melanie Parham, Shehan R. Perera, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Tuberculosis Imaging Program, Jason M. Brenchley, Artur T.L. Queiroz, Bruno B. Andrade, Juraj Kabat, Laura E. Via, Daniel L. Barber
bioRxiv 2021.12.17.473203; doi: https://doi.org/10.1101/2021.12.17.473203
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CD4 T cells are rapidly depleted from tuberculosis granulomas following acute SIV co-infection
Taylor W. Foreman, Christine E. Nelson, Keith D. Kauffman, Nickiana E. Lora, Caian L. Vinhaes, Danielle E. Dorosky, Shunsuke Sakai, Felipe Gomez, Joel D. Fleegle, Melanie Parham, Shehan R. Perera, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Tuberculosis Imaging Program, Jason M. Brenchley, Artur T.L. Queiroz, Bruno B. Andrade, Juraj Kabat, Laura E. Via, Daniel L. Barber
bioRxiv 2021.12.17.473203; doi: https://doi.org/10.1101/2021.12.17.473203

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