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A DNA-based optical force sensor for live-cell applications

Christina Jayachandran, View ORCID ProfileArindam Ghosh, Meenakshi Prabhune, Jonathan Bath, Andrew J. Turberfield, Lara Hauke, Jörg Enderlein, Florian Rehfeldt, Christoph F. Schmidt
doi: https://doi.org/10.1101/2021.12.21.473677
Christina Jayachandran
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
2Department of Pharmacy - Center for Drug Research, Pharmaceutical Biology, Ludwig-Maximilians University, Butenandtstr. 5-13, 81377 Munich, Germany
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Arindam Ghosh
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
3Department of Biotechnology and Biophysics, Biocenter, University of Würzburg, Am Hubland, 97074 Würzburg, Germany
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  • ORCID record for Arindam Ghosh
Meenakshi Prabhune
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
4Synthego Corporation, 3565 Haven Ave, Menlo Park, CA 94025, USA
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Jonathan Bath
5Department of Physics, Clarendon Laboratory, University of Oxford, Oxford, UK, OX1 3PU
6The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford, UK, OX1 3QU
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Andrew J. Turberfield
5Department of Physics, Clarendon Laboratory, University of Oxford, Oxford, UK, OX1 3PU
6The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford, UK, OX1 3QU
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Lara Hauke
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
7Institute of Pharmacology and Toxicology, University Medical Center Göttingen, Germany
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Jörg Enderlein
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
8Cluster of Excellence “Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells” (MBExC), Georg August University, 37077 Göttingen, Germany
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Florian Rehfeldt
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
9Experimental Physics I, University of Bayreuth, Universitätsstr. 30, 95440 Bayreuth, Germany
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  • For correspondence: florian.rehfeldt@uni-bayreuth.de cfschmidt@phy.duke.edu
Christoph F. Schmidt
1Third Institute of Physics—Biophysics, Georg August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
10Department of Physics and Soft Matter Center, Duke University, Durham, NC 27708, USA
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  • For correspondence: florian.rehfeldt@uni-bayreuth.de cfschmidt@phy.duke.edu
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Abstract

Mechanical forces are relevant for many biological processes, from wound healing or tumour formation to cell migration and differentiation. Cytoskeletal actin is largely responsible for responding to forces and transmitting them in cells, while also maintaining cell shape and integrity. Here, we describe a novel approach to employ a FRET-based DNA force sensor in vitro and in cellulo for non-invasive optical monitoring of intracellular mechanical forces. We use fluorescence lifetime imaging to determine the FRET efficiency of the sensor, which makes the measurement robust against intensity variations. We demonstrate the applicability of the sensor by monitoring cross-linking activity in in vitro actin networks by bulk rheology and confocal microscopy. We further demonstrate that the sensor readily attaches to stress fibers in living cells which opens up the possibility of live-cell force measurements.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 22, 2021.
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A DNA-based optical force sensor for live-cell applications
Christina Jayachandran, Arindam Ghosh, Meenakshi Prabhune, Jonathan Bath, Andrew J. Turberfield, Lara Hauke, Jörg Enderlein, Florian Rehfeldt, Christoph F. Schmidt
bioRxiv 2021.12.21.473677; doi: https://doi.org/10.1101/2021.12.21.473677
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A DNA-based optical force sensor for live-cell applications
Christina Jayachandran, Arindam Ghosh, Meenakshi Prabhune, Jonathan Bath, Andrew J. Turberfield, Lara Hauke, Jörg Enderlein, Florian Rehfeldt, Christoph F. Schmidt
bioRxiv 2021.12.21.473677; doi: https://doi.org/10.1101/2021.12.21.473677

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