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Combination of Mycobacterium tuberculosis RS ratio and CFU improves the ability of murine efficacy experiments to distinguish between drug treatments

View ORCID ProfileChristian Dide-Agossou, Allison A. Bauman, Michelle E. Ramey, Karen Rossmassler, Reem Al Mubarak, Samantha Pauly, Martin I. Voskuil, Maria Garcia-Cremades, View ORCID ProfileRada M. Savic, Payam Nahid, Camille M. Moore, Rokeya Tasneen, Eric L. Nuermberger, View ORCID ProfileGregory T. Robertson, Nicholas D. Walter
doi: https://doi.org/10.1101/2021.12.21.473768
Christian Dide-Agossou
1Department of Epidemiology, Colorado School of Public Health, Aurora, CO, USA
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  • For correspondence: christian.dide-agossou@cuanschutz.edu
Allison A. Bauman
2Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA
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Michelle E. Ramey
2Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA
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Karen Rossmassler
3Rocky Mountain Regional VA Medical Center, Aurora, CO, USA
4Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
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Reem Al Mubarak
3Rocky Mountain Regional VA Medical Center, Aurora, CO, USA
4Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
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Samantha Pauly
3Rocky Mountain Regional VA Medical Center, Aurora, CO, USA
4Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
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Martin I. Voskuil
5Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
6Consortium for Applied Microbial Metrics, Aurora, CO, USA
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Maria Garcia-Cremades
7Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA
8Departamento de Farmacia Galénica y Tecnología Alimentaria, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
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Rada M. Savic
6Consortium for Applied Microbial Metrics, Aurora, CO, USA
7Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA
9Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, CA, USA
10Division of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, USA
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  • ORCID record for Rada M. Savic
Payam Nahid
6Consortium for Applied Microbial Metrics, Aurora, CO, USA
9Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, CA, USA
10Division of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, USA
11UCSF Center for Tuberculosis, San Francisco, CA, USA
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Camille M. Moore
12Division of Biostatistics and Bioinformatics, National Jewish Health, Denver, CO, USA
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Rokeya Tasneen
13Center for Tuberculosis Research, Johns Hopkins University, Baltimore, MD, USA
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Eric L. Nuermberger
13Center for Tuberculosis Research, Johns Hopkins University, Baltimore, MD, USA
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Gregory T. Robertson
2Mycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO, USA
6Consortium for Applied Microbial Metrics, Aurora, CO, USA
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Nicholas D. Walter
3Rocky Mountain Regional VA Medical Center, Aurora, CO, USA
4Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
6Consortium for Applied Microbial Metrics, Aurora, CO, USA
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ABSTRACT

Murine tuberculosis drug efficacy studies have historically monitored bacterial burden based on colony forming units of M. tuberculosis in lung homogenate. In an alternative approach, a recently described molecular pharmacodynamic marker called the RS ratio quantifies drug effect on a fundamental cellular process: ongoing ribosomal RNA synthesis. Here we evaluated the ability of different pharmacodynamic markers to distinguish between treatments in three BALB/c mouse experiments at two institutions. We confirmed that different pharmacodynamic markers measure distinct biological responses. We found that a combination of pharmacodynamic markers distinguishes between treatments better than any single marker. The combination of the RS ratio with colony forming units showed the greatest ability to recapitulate the rank order of regimen treatment-shortening activity, providing proof of concept that simultaneous assessment of pharmacodynamic markers measuring different properties will enhance insight gained from animal models and accelerate development of new combination regimens. These results suggest potential for a new era in which antimicrobial therapies are evaluated not only on culture-based measures of bacterial burden but also on molecular assays that indicate how drugs impact the physiological state of the pathogen.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted December 24, 2021.
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Combination of Mycobacterium tuberculosis RS ratio and CFU improves the ability of murine efficacy experiments to distinguish between drug treatments
Christian Dide-Agossou, Allison A. Bauman, Michelle E. Ramey, Karen Rossmassler, Reem Al Mubarak, Samantha Pauly, Martin I. Voskuil, Maria Garcia-Cremades, Rada M. Savic, Payam Nahid, Camille M. Moore, Rokeya Tasneen, Eric L. Nuermberger, Gregory T. Robertson, Nicholas D. Walter
bioRxiv 2021.12.21.473768; doi: https://doi.org/10.1101/2021.12.21.473768
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Combination of Mycobacterium tuberculosis RS ratio and CFU improves the ability of murine efficacy experiments to distinguish between drug treatments
Christian Dide-Agossou, Allison A. Bauman, Michelle E. Ramey, Karen Rossmassler, Reem Al Mubarak, Samantha Pauly, Martin I. Voskuil, Maria Garcia-Cremades, Rada M. Savic, Payam Nahid, Camille M. Moore, Rokeya Tasneen, Eric L. Nuermberger, Gregory T. Robertson, Nicholas D. Walter
bioRxiv 2021.12.21.473768; doi: https://doi.org/10.1101/2021.12.21.473768

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