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A rhythmically pulsing leaf-spring nanoengine that drives a passive follower

Mathias Centola, View ORCID ProfileErik Poppleton, View ORCID ProfileMartin Centola, View ORCID ProfileJulián Valero, View ORCID ProfilePetr Šulc, View ORCID ProfileMichael Famulok
doi: https://doi.org/10.1101/2021.12.22.473833
Mathias Centola
1LIMES Program Unit Chemical Biology & Medicinal Chemistry, c/o Kekulé Institut für Organische Chemie und Biochemie, University of Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
2Center of Advanced European Studies and Research (CAESAR), Ludwig-Erhard-Allee 2, 53175 Bonn, Germany
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Erik Poppleton
3School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, 1001 South McAllister Avenue, Tempe, Arizona 85281, USA
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Martin Centola
4Max-Planck-Institute of Biophysics, Max-von-Laue-Straβe 3, 60438, Frankfurt, Germany
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Julián Valero
1LIMES Program Unit Chemical Biology & Medicinal Chemistry, c/o Kekulé Institut für Organische Chemie und Biochemie, University of Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
2Center of Advanced European Studies and Research (CAESAR), Ludwig-Erhard-Allee 2, 53175 Bonn, Germany
5Interdisciplinary Nanoscience Center - INANO-MBG, iNANO-huset, Gustav Wieds Vej 14, building 1592, 328, 8000 Århus C, Denmark
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Petr Šulc
3School of Molecular Sciences and Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, 1001 South McAllister Avenue, Tempe, Arizona 85281, USA
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Michael Famulok
1LIMES Program Unit Chemical Biology & Medicinal Chemistry, c/o Kekulé Institut für Organische Chemie und Biochemie, University of Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
2Center of Advanced European Studies and Research (CAESAR), Ludwig-Erhard-Allee 2, 53175 Bonn, Germany
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  • For correspondence: m.famulok@uni-bonn.de
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Abstract

Molecular engineering seeks to create functional entities for the modular use in the bottom-up design of nanoassemblies that can perform complex tasks. Such systems require fuel-consuming nanomotors that can actively drive downstream passive followers. Most molecular motors are driven by Brownian motion, but the generated forces are scattered and insufficient for efficient transfer to passive second-tier components, which is why nanoscale driver-follower systems have not been realized. Here, we describe bottom-up construction of a DNA-nanomachine that engages in an active, autonomous and rhythmical pulsing motion of two rigid DNA-origami arms, driven by chemical energy. We show the straightforward coupling of the active nanomachine to a passive follower unit, to which it then transmits its own motion, thus constituting a genuine driver-follower pair. Our work introduces a versatile fuel-consuming nanomachine that can be coupled with passive modules in nanoassemblies, the function of which depends on downstream sequences of motion.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/sulcgroup/hinges

  • https://drive.google.com/drive/folders/1KoocIZRPcRJ7us0q695_ya3cXNxYUn2t

  • https://drive.google.com/drive/folders/1gp6lGHHh55W4BCZR7tnTNTAuUsph-GQQ?usp=sharing

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 23, 2021.
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A rhythmically pulsing leaf-spring nanoengine that drives a passive follower
Mathias Centola, Erik Poppleton, Martin Centola, Julián Valero, Petr Šulc, Michael Famulok
bioRxiv 2021.12.22.473833; doi: https://doi.org/10.1101/2021.12.22.473833
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A rhythmically pulsing leaf-spring nanoengine that drives a passive follower
Mathias Centola, Erik Poppleton, Martin Centola, Julián Valero, Petr Šulc, Michael Famulok
bioRxiv 2021.12.22.473833; doi: https://doi.org/10.1101/2021.12.22.473833

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