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Plankton-infecting relatives of herpesviruses clarify the evolutionary trajectory of giant viruses

Morgan Gaïa, Lingjie Meng, Eric Pelletier, Patrick Forterre, Chiara Vanni, Antonio Fernandez-Guerra, Olivier Jaillon, Patrick Wincker, Hiroyuki Ogata, Mart Krupovic, Tom O. Delmont
doi: https://doi.org/10.1101/2021.12.27.474232
Morgan Gaïa
1Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
2Research Federation for the study of Global Ocean systems ecology and evolution, FR2022/Tara GOsee, Paris, France
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Lingjie Meng
3Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011, Japan
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Eric Pelletier
1Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
2Research Federation for the study of Global Ocean systems ecology and evolution, FR2022/Tara GOsee, Paris, France
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Patrick Forterre
4Institut de Biologie Intégrative de la Cellule (I2BC), CNRS, Université Paris-Saclay, 91198 Gif sur Yvette, France
5Institut Pasteur, Département de Microbiologie, 25 rue du Docteur Roux, 75017, Paris, France
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Chiara Vanni
6MARUM center for marine environmental sciences, University of Bremen, Germany
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Antonio Fernandez-Guerra
7Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
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Olivier Jaillon
1Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
2Research Federation for the study of Global Ocean systems ecology and evolution, FR2022/Tara GOsee, Paris, France
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Patrick Wincker
1Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
2Research Federation for the study of Global Ocean systems ecology and evolution, FR2022/Tara GOsee, Paris, France
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Hiroyuki Ogata
3Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011, Japan
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Mart Krupovic
8Institut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, Paris, France
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Tom O. Delmont
1Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
2Research Federation for the study of Global Ocean systems ecology and evolution, FR2022/Tara GOsee, Paris, France
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  • For correspondence: tomodelmont@gmail.com
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Abstract

DNA viruses have a major influence on the ecology and evolution of cellular organisms, but their overall diversity and evolutionary trajectories remain elusive. Here, we performed a phylogeny-guided genome-resolved metagenomic survey of the sunlit oceans and discovered plankton-infecting relatives of herpesviruses that form a putative new phylum dubbed ‘Mirusviricota’. The virion morphogenesis module of this large monophyletic clade is typical of viruses from the realm Duplodnaviria, with the major capsid protein fold being a likely structural intermediate between the capsid proteins of Caudoviricetes (tailed phages) and Herpesvirales (animal-infecting viruses). Yet, a substantial fraction of ‘Mirusviricota’ genes, including hallmark transcription machinery genes missing in herpesviruses, are closely related homologs of large and giant eukaryotic DNA viruses from another viral realm. The remarkable chimeric attributes of ‘Mirusviricota’ provide missing links in the evolution of both herpesviruses and giant viruses. Furthermore, mirusviruses are widespread and transcriptionally active from pole to pole, encoding complex functional traits used during the infection of microbial eukaryotes. The ‘Mirusviricota’ prevalence, functional activity, diversification, and atypical evolutionary traits point to a lasting role of mirusviruses in the ecology of marine ecosystems that might have not only predated but also contributed to the emergence of herpesviruses and giant viruses.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Co-first authors

  • We have incorporated metatranscriptomic data to study the in situ activity of mirusviuses during infection of unicellular eukaryotes (Figure 4). We also propose models of evolution for eukaryotic DNA viruses, along with a summary of the occurence of hallmark genes (Figure 5).

  • https://doi.org/10.6084/m9.figshare.20284713

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted October 29, 2022.
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Plankton-infecting relatives of herpesviruses clarify the evolutionary trajectory of giant viruses
Morgan Gaïa, Lingjie Meng, Eric Pelletier, Patrick Forterre, Chiara Vanni, Antonio Fernandez-Guerra, Olivier Jaillon, Patrick Wincker, Hiroyuki Ogata, Mart Krupovic, Tom O. Delmont
bioRxiv 2021.12.27.474232; doi: https://doi.org/10.1101/2021.12.27.474232
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Plankton-infecting relatives of herpesviruses clarify the evolutionary trajectory of giant viruses
Morgan Gaïa, Lingjie Meng, Eric Pelletier, Patrick Forterre, Chiara Vanni, Antonio Fernandez-Guerra, Olivier Jaillon, Patrick Wincker, Hiroyuki Ogata, Mart Krupovic, Tom O. Delmont
bioRxiv 2021.12.27.474232; doi: https://doi.org/10.1101/2021.12.27.474232

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