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EZ Clear for simple, rapid, and robust mouse whole organ clearing

Chih-Wei Hsu, Juan Cerda III, Jason M. Kirk, Williamson D. Turner, Tara L. Rasmussen, Carlos P. Flores Suarez, Mary E. Dickinson, View ORCID ProfileJoshua D. Wythe
doi: https://doi.org/10.1101/2022.01.12.476113
Chih-Wei Hsu
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
2Optical Imaging and Vital Microscopy Core, Advance Technology Cores, Baylor College of Medicine, Houston, TX 77030
3Department of Education, Innovation and Technology, Baylor College of Medicine, Houston, TX 77030
4Cardiovascular Research Institute, Baylor College of Medicine, Houston, TX 77030
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  • For correspondence: loganh@bcm.edu Joshua.Wythe@bcm.edu
Juan Cerda III
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
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Jason M. Kirk
2Optical Imaging and Vital Microscopy Core, Advance Technology Cores, Baylor College of Medicine, Houston, TX 77030
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Williamson D. Turner
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
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Tara L. Rasmussen
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
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Carlos P. Flores Suarez
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
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Mary E. Dickinson
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
2Optical Imaging and Vital Microscopy Core, Advance Technology Cores, Baylor College of Medicine, Houston, TX 77030
4Cardiovascular Research Institute, Baylor College of Medicine, Houston, TX 77030
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Joshua D. Wythe
1Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030
4Cardiovascular Research Institute, Baylor College of Medicine, Houston, TX 77030
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  • ORCID record for Joshua D. Wythe
  • For correspondence: loganh@bcm.edu Joshua.Wythe@bcm.edu
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ABSTRACT

Tissue clearing for whole organ cell profiling has revolutionized biology and imaging for exploration of organs in three-dimensional space without compromising tissue architecture. But complicated, laborious procedures, or expensive equipment, as well as the use of hazardous, organic solvents prevents the widespread adoption of these methods. Here we report a simple and rapid tissue clearing method, EZ Clear, that can clear whole adult mouse organs in 48 hours in just three simple steps. Samples stay at room temperature and remain hydrated throughout the clearing process, preserving endogenous and synthetic fluorescence, without altering sample size. After wholemount clearing and imaging, EZ Cleared samples can be further processed for downstream embedding and cryosectioning followed by standard histology or immunostaining, without loss of endogenous or synthetic fluorescence signal. Overall, the simplicity, speed, and flexibility of EZ Clear make it easy to adopt and apply to diverse approaches in biomedical research.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 13, 2022.
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EZ Clear for simple, rapid, and robust mouse whole organ clearing
Chih-Wei Hsu, Juan Cerda III, Jason M. Kirk, Williamson D. Turner, Tara L. Rasmussen, Carlos P. Flores Suarez, Mary E. Dickinson, Joshua D. Wythe
bioRxiv 2022.01.12.476113; doi: https://doi.org/10.1101/2022.01.12.476113
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EZ Clear for simple, rapid, and robust mouse whole organ clearing
Chih-Wei Hsu, Juan Cerda III, Jason M. Kirk, Williamson D. Turner, Tara L. Rasmussen, Carlos P. Flores Suarez, Mary E. Dickinson, Joshua D. Wythe
bioRxiv 2022.01.12.476113; doi: https://doi.org/10.1101/2022.01.12.476113

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