Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Naïve arthritogenic SKG T cells have a defect in anergy and a repertoire pruned by superantigen

View ORCID ProfileJudith Ashouri, Elizabeth McCarthy, Steven Yu, Noah Perlmutter, Charles Lin, Joe DeRisi, View ORCID ProfileChun Jimmie Ye, Arthur Weiss
doi: https://doi.org/10.1101/2022.01.13.476250
Judith Ashouri
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Judith Ashouri
  • For correspondence: Arthur.Weiss@ucsf.edu Jimmie.Ye@ucsf.edu Judith.Ashouri@ucsf.edu
Elizabeth McCarthy
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
2Department of Epidemiology and Biostatistics, UCSF, San Francisco
3Institute for Human Genetics, UCSF, San Francisco.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Steven Yu
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Noah Perlmutter
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Charles Lin
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
4Stanford University, Palo Alto, CA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Joe DeRisi
5Department of Biochemistry and Biophysics, UCSF, San Francisco.
6Chan Zuckerberg Biohub, San Francisco, CA
7Bakar Computational Health Sciences Institute, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chun Jimmie Ye
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
3Institute for Human Genetics, UCSF, San Francisco.
6Chan Zuckerberg Biohub, San Francisco, CA
7Bakar Computational Health Sciences Institute, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Chun Jimmie Ye
  • For correspondence: Arthur.Weiss@ucsf.edu Jimmie.Ye@ucsf.edu Judith.Ashouri@ucsf.edu
Arthur Weiss
1Rosalind Russell and Ephraim P. Engleman Rheumatology Research Center, Department of Medicine, UCSF, San Francisco
8Howard Hughes Medical Institute, UCSF, San Francisco
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: Arthur.Weiss@ucsf.edu Jimmie.Ye@ucsf.edu Judith.Ashouri@ucsf.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

How autoreactive CD4 T cells develop to cause rheumatoid arthritis remains unknown. We used a reporter for antigen-receptor signaling in the SKG autoimmune arthritis model to profile a T cell subpopulation enriched for arthritogenic naïve CD4 T cells before arthritis onset by bulk and single cell RNA and T cell antigen-receptor (TCR) sequencing. Our analyses reveal that despite their impaired proximal TCR signaling, a subset of SKG naïve CD4 T cells that have recently encountered endogenous antigen upregulate gene programs associated with positive regulation of T cell activation and cytokine signaling at higher levels than wild type cells in the pre-disease state. These arthritogenic cells also induce genes associated with negative regulation of T cell activation but do so less efficiently than wild type cells. Furthermore, their TCR sequences exhibit a previously unrecognized biased peripheral TCR Vβ repertoire likely driven by endogenous viral superantigens. These particular Vβs, known to recognize endogenous mouse mammary tumor virus (MMTV) superantigen, are further expanded in arthritic joints. Our results demonstrate that autoreactive naïve CD4 T cells which recognize endogenous viral superantigens are poised to cause disease by their altered transcriptome.

Summary blurb Self-reactive SKG T cells that escaped negative selection harbor an independent defect in anergy that, together with chronic antigen stimulation, sets the stage for disease. Moreover, we propose a novel role for endogenous mouse mammary tumor virus (MMTV) superantigen in promoting arthritogenic T cell responses.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted January 16, 2022.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Naïve arthritogenic SKG T cells have a defect in anergy and a repertoire pruned by superantigen
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Naïve arthritogenic SKG T cells have a defect in anergy and a repertoire pruned by superantigen
Judith Ashouri, Elizabeth McCarthy, Steven Yu, Noah Perlmutter, Charles Lin, Joe DeRisi, Chun Jimmie Ye, Arthur Weiss
bioRxiv 2022.01.13.476250; doi: https://doi.org/10.1101/2022.01.13.476250
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Naïve arthritogenic SKG T cells have a defect in anergy and a repertoire pruned by superantigen
Judith Ashouri, Elizabeth McCarthy, Steven Yu, Noah Perlmutter, Charles Lin, Joe DeRisi, Chun Jimmie Ye, Arthur Weiss
bioRxiv 2022.01.13.476250; doi: https://doi.org/10.1101/2022.01.13.476250

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Immunology
Subject Areas
All Articles
  • Animal Behavior and Cognition (3607)
  • Biochemistry (7581)
  • Bioengineering (5529)
  • Bioinformatics (20809)
  • Biophysics (10338)
  • Cancer Biology (7988)
  • Cell Biology (11647)
  • Clinical Trials (138)
  • Developmental Biology (6611)
  • Ecology (10217)
  • Epidemiology (2065)
  • Evolutionary Biology (13630)
  • Genetics (9550)
  • Genomics (12854)
  • Immunology (7925)
  • Microbiology (19555)
  • Molecular Biology (7668)
  • Neuroscience (42147)
  • Paleontology (308)
  • Pathology (1258)
  • Pharmacology and Toxicology (2203)
  • Physiology (3269)
  • Plant Biology (7051)
  • Scientific Communication and Education (1294)
  • Synthetic Biology (1952)
  • Systems Biology (5429)
  • Zoology (1119)