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Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX

View ORCID ProfileLainey J. Williamson, Marina Galchenkova, View ORCID ProfileHannah L. Best, Richard J. Bean, View ORCID ProfileAnna Munke, Salah Awel, Gisel Pena, Juraj Knoska, Robin Schubert, Katerina Doerner, Emyr Lloyd-Evans, Mark Young, Joana Valerio, Marco Kloos, Marcin Sikorski, Grant Mills, Johan Bieleki, Henry Kirkwood, Chan Kim, Raphael de Wijn, Kristina Lorenzen, P. Lourdu Xavier, Aida Rahmani, Luca Gelisio, Oleksandr Yefanov, Adrian P. Mancuso, Henry N. Chapman, Neil Crickmore, Pierre J. Rizkallah, Colin Berry, Dominik Oberthür
doi: https://doi.org/10.1101/2022.01.14.476343
Lainey J. Williamson
1School of Biosciences, Cardiff University, UK
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Marina Galchenkova
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Hannah L. Best
1School of Biosciences, Cardiff University, UK
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Richard J. Bean
3European XFEL GmbH, Schenefeld, Germany
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Anna Munke
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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  • ORCID record for Anna Munke
Salah Awel
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Gisel Pena
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Juraj Knoska
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Robin Schubert
3European XFEL GmbH, Schenefeld, Germany
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Katerina Doerner
3European XFEL GmbH, Schenefeld, Germany
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Emyr Lloyd-Evans
1School of Biosciences, Cardiff University, UK
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Mark Young
1School of Biosciences, Cardiff University, UK
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Joana Valerio
3European XFEL GmbH, Schenefeld, Germany
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Marco Kloos
3European XFEL GmbH, Schenefeld, Germany
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Marcin Sikorski
3European XFEL GmbH, Schenefeld, Germany
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Grant Mills
3European XFEL GmbH, Schenefeld, Germany
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Johan Bieleki
3European XFEL GmbH, Schenefeld, Germany
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Henry Kirkwood
3European XFEL GmbH, Schenefeld, Germany
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Chan Kim
3European XFEL GmbH, Schenefeld, Germany
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Raphael de Wijn
3European XFEL GmbH, Schenefeld, Germany
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Kristina Lorenzen
3European XFEL GmbH, Schenefeld, Germany
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P. Lourdu Xavier
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
4Max-Planck Institute for the Structure and Dynamics of Matter, 22761 Hamburg, Germany
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Aida Rahmani
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Luca Gelisio
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Oleksandr Yefanov
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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Adrian P. Mancuso
3European XFEL GmbH, Schenefeld, Germany
5Department of Chemistry and Physics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia
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Henry N. Chapman
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
6Centre for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany
7Department of Physics, Universität Hamburg, Hamburg, Germany
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Neil Crickmore
8School of Life Sciences, University of Sussex, Falmer, UK
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Pierre J. Rizkallah
9School of Medicine, Cardiff University, UK
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Colin Berry
1School of Biosciences, Cardiff University, UK
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  • For correspondence: berry@cardiff.ac.uk dominik.oberthuer@cfel.de
Dominik Oberthür
2Center for Free Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
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  • For correspondence: berry@cardiff.ac.uk dominik.oberthuer@cfel.de
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Abstract

Tpp49Aa1 from Lysinibacillus sphaericus is a Toxin_10 family protein that must interact with Cry48Aa1, a 3-domain crystal protein, to produce potent mosquitocidal activity, specifically against Culex quinquefasciatus mosquitoes. We use Culex cell lines to demonstrate for the first time transient detrimental effects of individual toxin components and widen the known target range of the proteins.

MHz serial femtosecond crystallography at a nano-focused X-ray free electron laser allowed rapid and high-quality data collection to determine the Tpp49Aa1 structure at 2.2 Å resolution from the merged X-ray diffraction data. The structure revealed the packing of Cry49Aa1 within the natural nanocrystals isolated from sporulated bacteria, as a homodimer with a large intermolecular interface. We then modelled the potential interaction between Tpp49Aa1 and Cry48Aa1. The structure sheds light on natural crystallisation and, along with cell-based assays broadens our understanding of this two-component system.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 15, 2022.
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Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX
Lainey J. Williamson, Marina Galchenkova, Hannah L. Best, Richard J. Bean, Anna Munke, Salah Awel, Gisel Pena, Juraj Knoska, Robin Schubert, Katerina Doerner, Emyr Lloyd-Evans, Mark Young, Joana Valerio, Marco Kloos, Marcin Sikorski, Grant Mills, Johan Bieleki, Henry Kirkwood, Chan Kim, Raphael de Wijn, Kristina Lorenzen, P. Lourdu Xavier, Aida Rahmani, Luca Gelisio, Oleksandr Yefanov, Adrian P. Mancuso, Henry N. Chapman, Neil Crickmore, Pierre J. Rizkallah, Colin Berry, Dominik Oberthür
bioRxiv 2022.01.14.476343; doi: https://doi.org/10.1101/2022.01.14.476343
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Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX
Lainey J. Williamson, Marina Galchenkova, Hannah L. Best, Richard J. Bean, Anna Munke, Salah Awel, Gisel Pena, Juraj Knoska, Robin Schubert, Katerina Doerner, Emyr Lloyd-Evans, Mark Young, Joana Valerio, Marco Kloos, Marcin Sikorski, Grant Mills, Johan Bieleki, Henry Kirkwood, Chan Kim, Raphael de Wijn, Kristina Lorenzen, P. Lourdu Xavier, Aida Rahmani, Luca Gelisio, Oleksandr Yefanov, Adrian P. Mancuso, Henry N. Chapman, Neil Crickmore, Pierre J. Rizkallah, Colin Berry, Dominik Oberthür
bioRxiv 2022.01.14.476343; doi: https://doi.org/10.1101/2022.01.14.476343

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