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Crystal Structure of Caskin1/CASK complex reveals the molecular basis of the binding specificity of CASK_CAMK domain and its binding partners

Yue Wang, Qiangou Chen, Riting Jiang, Xiaoyang Ye, Jun Wan, Jianchao Li, Wei Liu
doi: https://doi.org/10.1101/2022.01.16.476467
Yue Wang
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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Qiangou Chen
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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Riting Jiang
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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Xiaoyang Ye
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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Jun Wan
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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Jianchao Li
2Division of Cell, Developmental and Integrative Biology, School of Medicine, South China University of Technology, Guangzhou, China
3Department of Otorhinolaryngology, Guangzhou First People’s Hospital, School of Medicine, South China University of Technology, Guangzhou, China
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Wei Liu
1Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China
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  • For correspondence: liulaboratory.shenzhen@gmail.com
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Abstract

CASK is a unique scaffold protein in the synapse system. It links numerous proteins to the pre- or post-synaptic region and is critical to the homeostasis of synaptic vesicles. The N-terminus of CASK is a calcium/calmodulin-dependent protein kinase (CAMK) domain, which has diverse functions and interacts with downstream proteins to form a scaffold platform. Caskin1 is one of the brain-specific adaptor proteins of CASK. Previous studies showed that CASK_CAMK domain interacts with Caskin1 CID domain with relatively low affinity. In this study, we re-visit this interaction by remapping the interaction boundary and solving their complex structure. Based on the structure, we systematically compared the interactions between CASK_CAMK and other binding partners. Our results showed that CAMK domain occupies the CID peptide by using its C-lobe groove (between the α1 and α2) and there is a highly conserved signature motif (ζ-x-ψ-W-ψ-x-R) in the CID domain, where ζ is acidic side chain containing residues, x is any amino acid residue, ψ is hydrophobic residues, W is for tryptophan, and R is arginine. These findings allowed us to identify several new potential cytoplasmic binding partners for CASK_CAMK.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Co-response authors.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 17, 2022.
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Crystal Structure of Caskin1/CASK complex reveals the molecular basis of the binding specificity of CASK_CAMK domain and its binding partners
Yue Wang, Qiangou Chen, Riting Jiang, Xiaoyang Ye, Jun Wan, Jianchao Li, Wei Liu
bioRxiv 2022.01.16.476467; doi: https://doi.org/10.1101/2022.01.16.476467
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Crystal Structure of Caskin1/CASK complex reveals the molecular basis of the binding specificity of CASK_CAMK domain and its binding partners
Yue Wang, Qiangou Chen, Riting Jiang, Xiaoyang Ye, Jun Wan, Jianchao Li, Wei Liu
bioRxiv 2022.01.16.476467; doi: https://doi.org/10.1101/2022.01.16.476467

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