Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models

Daniel R. Weilandt; Pierre Salvy; Maria Masid; Georgios Fengos; Robin Denhardt-Erikson; Zhaleh Hosseini; Vassily Hatzimanikatis

doi:10.1101/2022.01.17.476618

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Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models

View ORCID ProfileDaniel R. Weilandt, View ORCID ProfilePierre Salvy, View ORCID ProfileMaria Masid, View ORCID ProfileGeorgios Fengos, View ORCID ProfileRobin Denhardt-Erikson, View ORCID ProfileZhaleh Hosseini, View ORCID ProfileVassily Hatzimanikatis

doi: https://doi.org/10.1101/2022.01.17.476618

Daniel R. Weilandt

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

2Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, USA

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ORCID record for Daniel R. Weilandt

Pierre Salvy

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

3Cambrium GmBH, Germany

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Maria Masid

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

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Georgios Fengos

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

4EMBION Technologies S.A., Switzerland

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Robin Denhardt-Erikson

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

5LYO-X GmbH, Switzerland

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Zhaleh Hosseini

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

6MRC Toxicology Unit, University of Cambridge, Cambridge, United-Kingdom

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Vassily Hatzimanikatis

1Laboratory of Computational Systems Biotechnology, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland

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For correspondence: vassily.hatzimanikatis@epfl.ch

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Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models

Daniel R. Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson, Zhaleh Hosseini, Vassily Hatzimanikatis

bioRxiv 2022.01.17.476618; doi: https://doi.org/10.1101/2022.01.17.476618

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Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models

Daniel R. Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson, Zhaleh Hosseini, Vassily Hatzimanikatis

bioRxiv 2022.01.17.476618; doi: https://doi.org/10.1101/2022.01.17.476618

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